Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O19
         (1253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   3.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   9.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 572 DYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDHAAKGTACSVCWENFE 751
           D  + G    AV+ + + +  NS P P PR  +A+ P    +    AKG A +       
Sbjct: 488 DSGYDGAASTAVIHEPVVET-NSSPSPNPR--IASAPSSSTSSSPPAKGAAAAGQPSKRN 544

Query: 752 TGET 763
            GET
Sbjct: 545 GGET 548


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 344 HRPSCSYLHRQNHHLLH 294
           H     Y H+Q+HH LH
Sbjct: 798 HAAQMIYGHQQSHHGLH 814


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 236 VLQXYTCPYCAS 271
           VL+ YTCP C +
Sbjct: 69  VLRAYTCPICGA 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,872
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42862491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)