Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O16
         (1294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   177   1e-44
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   1.0  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   7.2  
Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical pr...    29   9.5  
Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical pr...    29   9.5  
X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2 prot...    29   9.5  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  177 bits (431), Expect = 1e-44
 Identities = 81/109 (74%), Positives = 95/109 (87%)
 Frame = +2

Query: 125 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 304
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 305 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 451
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVP 109


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 182 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 277
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 699 PPLXXGXXPXPXXFFXXXGPXXPPXRGXPPPXP 601
           PP   G  P P   F    P  PP  G  PP P
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPP 108



 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 699 PPLXXGXXPXPXXFFXXXGPXXPPXRGXPPPXP 601
           PP+  G  P P        P  PP  G PPP P
Sbjct: 87  PPMFAGGIPPPPPMMGGI-PPPPPMFGAPPPPP 118



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -2

Query: 699 PPLXXGXXPXPXXFFXXXGPXXPPXRGXPPPXP 601
           PP   G  P P  F     P  P   G PPP P
Sbjct: 77  PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109


>Z81088-5|CAB03133.1|  215|Caenorhabditis elegans Hypothetical
           protein F53F1.5 protein.
          Length = 215

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 800 FXXXXGGGGGXFXXXXXPPPPXGXG 874
           F    GGGGG       PPPP G G
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCG 41


>Z81088-4|CAB03125.1|  105|Caenorhabditis elegans Hypothetical
           protein F53F1.4 protein.
          Length = 105

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 800 FXXXXGGGGGXFXXXXXPPPPXGXG 874
           F    GGGGG       PPPP G G
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCG 41


>X74838-1|CAA52832.1|  231|Caenorhabditis elegans cuticlin 2
           protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 800 FXXXXGGGGGXFXXXXXPPPPXGXG 874
           F    GGGGG       PPPP G G
Sbjct: 17  FLLPSGGGGGCGCAPPPPPPPCGCG 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,769
Number of Sequences: 27780
Number of extensions: 307905
Number of successful extensions: 1610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)