Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O15
         (1282 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    37   0.001
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    30   0.13 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   6.3  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   8.3  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 4/202 (1%)
 Frame = +3

Query: 396 QDRRRDVG---RQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKLIIQERALRTLFA 566
           ++++++VG   R++A  E  ++E+ AEM        K  +      K +  + AL+TL  
Sbjct: 274 KEKKKEVGKMTREMAKKEQEIREVEAEMSKRHPMFIKAKEKVAHTQKKL--DGALKTL-- 329

Query: 567 DAEKEERELFATMSAAVKLGHERERAHAERNKYWYIVASIFGTVLGIAGSTINNHLKMAE 746
             E+  R   A  +   KL  E +    +R  +   VA          GS ++    + +
Sbjct: 330 --EQARRADEAHQADIKKLVDELQEVEVKRAAFENEVAGESKK----RGSNVHLERDLVQ 383

Query: 747 FRDMMEQQM-ARSASVLYTIAGGGTASRADITEAMKTEFAYQEQLAQNWKLMQENINHLV 923
             D ++Q+  A S+  L  +       ++D  + + +E   + Q+ +N+K ++   N  +
Sbjct: 384 EYDRLKQKADATSSKYLIHLDSVNREQKSD-QDRLDSEINKKAQIEENYKKIESEKNEAL 442

Query: 924 NKQSXLIEHMXNQEHLVETQMK 989
            +Q  LI+H+      +E Q +
Sbjct: 443 KRQEKLIDHIKTSRLGLEEQKR 464


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
 Frame = +3

Query: 351 IQNTVIDAQDKFIAAQDRRRDVGRQLANIESRLKELHAEMQNTMKGDEKYLQLCTEEHKL 530
           I+N++ + Q++    ++++RD+  QL+  +    ++  + Q   K  E   +L   + + 
Sbjct: 638 IENSIKELQERCAELREQKRDLQEQLSKYQQTKMKVKRQEQ---KCKELTARLVNVDEEK 694

Query: 531 IIQERALRTLFADAEKEER------ELFATMSAAVKLGHERERAHAERN 659
           +  ER+ RT+      ++R      E +A  S    L  +R R   ERN
Sbjct: 695 VKFERSCRTIIEQLLDQQRRKVAALERYAAASREHDLLEQRIRLFEERN 743


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +3

Query: 312 KYEKFTGVEXIMAIQNTVIDAQDKFIAAQDRRRDV---GRQLANIESRLKELHAEM-QNT 479
           K ++FT +   +  +  ++ +  + I  Q     +   GRQ A  + R   L  +   NT
Sbjct: 279 KTDEFTNLVEFLEQRVNILKSSAQNICNQYSANSIMVTGRQ-ARRDGRNVALPVQQTNNT 337

Query: 480 MKGDEKYLQLCTEEHKLIIQERALRTLFADAEKEERE 590
            KG  K   LC E+H L + ER  R    + E+  R+
Sbjct: 338 FKGYLK-CPLCNEQHPLHVCERFERASVINREEIVRK 373


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 836 DVGPAGGPAPRDGVQDARAPG 774
           DVGP G P P+       APG
Sbjct: 156 DVGPKGEPGPKGPAGHPGAPG 176


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,979
Number of Sequences: 2352
Number of extensions: 18329
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 147148920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)