Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O12
         (1273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   9.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 305 LLHGRNRQGGGTYPCGLTIGPTTSDYANYN---FAGLIFITRCYSFTVE 168
           LL  R ++ G  +   L + P +S+Y  YN   + G  F  R + F ++
Sbjct: 604 LLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLD 652


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 305 LLHGRNRQGGGTYPCGLTIGPTTSDYANYN---FAGLIFITRCYSFTVE 168
           LL  R ++ G  +   L + P +S+Y  YN   + G  F  R + F ++
Sbjct: 604 LLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSRIWGGYKFDKRSFGFPLD 652


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 41  VVSGLKDQXSGASVVAMHRCSNPAGGXQFFV*NTYLTNVH 160
           V   LKD+  GAS V +       G     V N+   +VH
Sbjct: 7   VGDNLKDRFDGASRVMVSNSDRVRGNGNAIVSNSASNSVH 46


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 41  VVSGLKDQXSGASVVAMHRCSNPAGGXQFFV*NTYLTNVH 160
           V   LKD+  GAS V +       G     V N+   +VH
Sbjct: 8   VGDNLKDRFDGASRVMVSNSDRVRGNGNAIVSNSASNSVH 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,886
Number of Sequences: 438
Number of extensions: 4324
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)