Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O10
         (1242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   3.1  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   7.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   9.4  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 134 SPPTQGAKPSSAPGWNXPPKLSYXGQQTTPNRPRN 238
           S  T    PS+ P    P   +Y G QT PN   N
Sbjct: 455 SQSTSTTNPSATPTTGDPSNSTYGGPQTFPNSGNN 489


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 562 FLHLYMYAFI*FSINPHILHYTYSSFDIIPFW 467
           FLH   Y  + + +NP +L  T      IP+W
Sbjct: 20  FLHTLTYGLLNYHLNPRLLASTGVVESDIPYW 51


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 548 IQMKELAYAIRDDQPNKADEIHRALMVDHVSGVGSWMPGIKQLIHHCVAKSE 703
           +Q   L+YA+RD +P+ AD   ++    + S     M  +K+L+   + ++E
Sbjct: 148 LQSSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKKLVSFLLTETE 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,577
Number of Sequences: 5004
Number of extensions: 68354
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)