Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O09
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   3.2  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   5.6  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   5.6  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   7.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   7.4  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   9.8  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   9.8  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 691 LNKTFII*F-VLICNLIIQLLLSIFHSGR*DLLYGELGQLEDQHCDFVTSRV 539
           ++K F + F +L C+ I+  L S+ H G  + L   +  LED     + S+V
Sbjct: 686 MDKCFYLEFEILYCSAIVLFLFSVMHLGAENPLLESIYLLEDMGSRTIDSKV 737


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 520 YRSKKTL-GTVVGDEVRQLVPVQSLRLRVIQRP 425
           +  K+TL G VVGD +  +V +  L L   QRP
Sbjct: 123 WNGKQTLFGRVVGDTIYNVVRISELELDANQRP 155


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 662 YKLNYKGFVQEVTVAAEVMMNKFSNYI 742
           Y+LN    VQEVTV  E ++ K+   I
Sbjct: 401 YELNISYMVQEVTVVMETVLRKYPQKI 427


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 650 SHNTASFVDLSFWSIRPFVRRVG 582
           S+N  S  DLSFWS   FVR  G
Sbjct: 379 SNNFVSTSDLSFWSREYFVRSKG 401


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 488  DYSTKGLLTSVMSSYLVNPGCYKVTMLIFQLSQLAVQK--VLSTRMKDRQKKLYYEI 652
            D STKG+L  +MS+  V    +     +F LS L + K  + S    + Q+ LYY +
Sbjct: 1009 DESTKGILYEIMSTLFVFSRAFP---FLFDLSYLHLLKPYLRSASTIEEQRFLYYVV 1062


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 725 KFSNYILKRNTMERIAGLLLNKIKEMEETLQKSNAE 832
           K  NY+ KR +++ +  +LLN+      T   S+AE
Sbjct: 215 KSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAE 250


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 779  LLNKIKEMEETLQKSNAERCIND-IVDGYINSRQFDDSTKMELLQIKM*KHHH 934
            LL  ++   +++   N   C++  +VD     R++D S  +++L++   K HH
Sbjct: 966  LLQMLENNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHH 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,172,299
Number of Sequences: 5004
Number of extensions: 82418
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)