Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O09
         (1286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    29   5.4  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    29   5.4  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    29   5.4  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    29   7.1  

>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 580 QLEDQHCDFVTSRVHQV*GHYRS 512
           QL  QHC+FVT   H +  HYR+
Sbjct: 544 QLNCQHCNFVTEYKHHLEYHYRN 566


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 580 QLEDQHCDFVTSRVHQV*GHYRS 512
           QL  QHC+FVT   H +  HYR+
Sbjct: 566 QLNCQHCNFVTEYKHHLEYHYRN 588


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 580 QLEDQHCDFVTSRVHQV*GHYRS 512
           QL  QHC+FVT   H +  HYR+
Sbjct: 566 QLNCQHCNFVTEYKHHLEYHYRN 588


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 572  FQLSQLAVQKVLSTRMKDRQKKLYYEITNKYKLNYKGFVQEVTVAAEVMMNKFSNYI 742
            F+  +++ +K    +    +KK  YE ++ Y+ NY     E  +  + ++ +FSN +
Sbjct: 1476 FEFDRISEKKNYRNKWNREEKKSDYESSSDYESNYDEKETEEELVKKTLIKEFSNRV 1532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,786,674
Number of Sequences: 27780
Number of extensions: 449306
Number of successful extensions: 1075
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3599888010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)