Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O07
         (1329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.47 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.8  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = +2

Query: 362 GXRXGXXGXGGGXGGXAGXXXXAXARGKGVGXWGXXXXXG-QWXRGPRXRXRGG 520
           G R G  G  GG GG  G    A   G+G    G     G +  RG     RGG
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 26/104 (25%), Positives = 29/104 (27%), Gaps = 1/104 (0%)
 Frame = -3

Query: 709 PPPXXGXXFXXXPXGAGPXXKXXPPXPFXXSGPXAALWXXXXSRPXPRLLGXPXFPPWGX 530
           PP   G      P          PP P   S P +A      S P    +G P  PP   
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451

Query: 529 XXXXPPP-PXPGXXXPLXXXXXRXPXPXPLSPRXXPLXSPRXTP 401
                PP P      P        P P P      P+ S    P
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = -3

Query: 649 KXXPPXPFXXSGPXAALWXXXXSRPXPRLLGX-PXFPPWGXXXXXPPPPXP 500
           K  PP P     P  A        P P + G  P  PP G     PPPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.151    0.515 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,837
Number of Sequences: 5004
Number of extensions: 20645
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)