Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O06
         (1292 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma j...    39   0.32 
UniRef50_Q4X6Z3 Cluster: Putative uncharacterized protein; n=1; ...    31   4.1  
UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1; ...    34   9.2  

>UniRef50_Q5C3I4 Cluster: SJCHGC03138 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC03138 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 156

 Score = 38.7 bits (86), Expect = 0.32
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 333 PXFFXGXPPPXX-FFFXXXXPXPPPXGGPXP 244
           P FF G PPP   FFF      PPP GGP P
Sbjct: 27  PLFFYGAPPPPPPFFFNKKKRPPPPPGGPPP 57



 Score = 34.7 bits (76), Expect = 5.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 328 FFXGXXPPPXFFFXXXGXXPPPXGGAPXXGG 236
           F+    PPP FFF      PPP GG P   G
Sbjct: 30  FYGAPPPPPPFFFNKKKRPPPPPGGPPPPFG 60


>UniRef50_Q4X6Z3 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium chabaudi|Rep: Putative uncharacterized protein
            - Plasmodium chabaudi
          Length = 120

 Score = 31.5 bits (68), Expect(2) = 4.1
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 1106 PPXPLFFXXFXXGXXPXGKNFFFSRGG 1026
            PP PLFF     G    G NFFF R G
Sbjct: 24   PPPPLFFFSPFLGKKGGGDNFFFPRAG 50



 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 1274 GGXXGXXKKPPPPXXFF 1224
            GG      KPPPP  FF
Sbjct: 14   GGFFFFCGKPPPPPLFF 30


>UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1;
            Ruminococcus torques ATCC 27756|Rep: Putative
            uncharacterized protein - Ruminococcus torques ATCC 27756
          Length = 159

 Score = 33.9 bits (74), Expect = 9.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 1173 PPXXXXSXXKKVXFFXXKKXXGGGGFF 1253
            PP       KK+ FF  KK  GGGGFF
Sbjct: 68   PPPPPLKKKKKIFFFFFKKRGGGGGFF 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.312    0.150    0.501 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,818,762
Number of Sequences: 1657284
Number of extensions: 8420964
Number of successful extensions: 7628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7095
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 132414320193
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)