Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_O03
         (1322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.022
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.47 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +2

Query: 1085 PXPPPXKXVGTLXPAXXP-PPGXPXXSGXXXPXXXPKKKXNPXXPPPP 1225
            P PPP   V T  PA  P PP  P   G   P   P        PPPP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +2

Query: 1067 PXPXKNPXPPPXKXVGTLXPAXXPPPGXPXXSGXXXPXXXPKKKXNPXXPPPP 1225
            P P   P PPP   +G       PPP  P  +G   P         P  PPPP
Sbjct: 744  PAPAPIPVPPPAPIMG----GPPPPPPPPGVAGAGPP---------PPPPPPP 783



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 1174 PPXXPQKKKXPXXAPPPXPTXXXXKXKXXPPXPP 1275
            PP  P     P  AP P P          PP PP
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +2

Query: 1043 KKXPXXXHPXPXKNPXPPPXKXVGTLXPAXXPPPGXPXXSGXXXPXXXPKKKXNPXXPPP 1222
            KK P    P   +N   PP    G+   +  PPP  P  +        P+ +  P  PPP
Sbjct: 308  KKRPPPPPPPSRRNRGKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/59 (25%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
 Frame = +2

Query: 1052 PXXXHPXPXKNPXPPPXKXVGTLXPAXXPPPGXPXXSG-XXXPXXXPKKKXNPXXPPPP 1225
            P      P     PPP      +     PPP  P  S     P     +   P  P PP
Sbjct: 363  PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 29/129 (22%), Positives = 35/129 (27%), Gaps = 2/129 (1%)
 Frame = +2

Query: 845  VPPTPXXXRPXSHYPVTIXXXXXPGXHPXXPPXXXPHWXXG--LXXXXXXXXXXXHPLKX 1018
            +PP P   +P  H P        PG H   PP    H   G  +           H    
Sbjct: 207  MPPPPMHHKPGEHMPPP-PMHHEPGEHMPPPPM---HHEPGEHMPPPPMHHEPGEHMPPP 262

Query: 1019 GGPXXXXXKKXPXXXHPXPXKNPXPPPXKXVGTLXPAXXPPPGXPXXSGXXXPXXXPKKK 1198
                       P   H  P ++  PPP            PPP      G   P      +
Sbjct: 263  PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE---PGEHMPPPPMHHEPGEHMPPPPMHHE 319

Query: 1199 XNPXXPPPP 1225
                 PPPP
Sbjct: 320  PGEHMPPPP 328


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/51 (25%), Positives = 16/51 (31%)
 Frame = +1

Query: 1072 PXKKPXSPPXKXSGNXXTRQXXPXXXPXXFRXGXPPXXPQKKKXPXXAPPP 1224
            P     +PP +       +   P   P       PP  P     P  APPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 1073 PXKNPXPPPXKXVGTLXPAXXPPPGXPXXSGXXXPXXXPKKKXNPXXPPPP 1225
            P   P   P         A  PPP  P  S    P   P     P  PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 1177 PXXPQKKKXPXXAPPPXPTXXXXKXKXXPPXPPK 1278
            P  PQ +  P  + PP P+         PP P K
Sbjct: 130  PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSK 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,362
Number of Sequences: 5004
Number of extensions: 30592
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 725319970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)