Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_O01
(1327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.038
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.27
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 3.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 7.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/70 (30%), Positives = 22/70 (31%)
Frame = -1
Query: 613 PXXPKQXXXXXPAXSPXSGXTXGXPPXXGEPPXXPXPALXPXGGGRXXXGPTGPPXXRPX 434
P PK P +P SG P G PP P P P PP P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 433 XPPXSAPXXP 404
P SA P
Sbjct: 1219 VPTPSAGLPP 1228
Score = 28.3 bits (60), Expect = 2.5
Identities = 25/94 (26%), Positives = 30/94 (31%)
Frame = -1
Query: 613 PXXPKQXXXXXPAXSPXSGXTXGXPPXXGEPPXXPXPALXPXGGGRXXXGPTGPPXXRPX 434
P PK P P S P G PP P P++ P+G P
Sbjct: 1092 PPVPKPSVAAPPVPKP-SVAVPPVPAPSGAPPV-PKPSV----AAPPVPVPSGAPPV--P 1143
Query: 433 XPPXSAPXXPXXXXPPXXPEKXXXXPPQPGTXXG 332
P +AP P P P+ PP P G
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.038
Identities = 27/97 (27%), Positives = 29/97 (29%), Gaps = 2/97 (2%)
Frame = -1
Query: 631 GXXXXPPXXPKQXXXXXPAXSPXSGXTXGXPPXXGEP--PXXPXPALXPXGGGRXXXGPT 458
G PP P+ P S P P P PAL P G +
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT---S 413
Query: 457 GPPXXRPXXPPXSAPXXPXXXXPPXXPEKXXXXPPQP 347
PP P P SAP PP P PP P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 29.5 bits (63), Expect = 1.1
Identities = 25/96 (26%), Positives = 27/96 (28%), Gaps = 6/96 (6%)
Frame = -1
Query: 616 PPXXPKQXXXXXPAXSPXSGXTXGXPPXXGEPPXXPX---PALXPXGGGRXXXG-PTGPP 449
P P PA P + P PP P P+L P G P PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Query: 448 XX--RPXXPPXSAPXXPXXXXPPXXPEKXXXXPPQP 347
P PP A PP P P P
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/65 (24%), Positives = 19/65 (29%)
Frame = -1
Query: 541 PPXXGEPPXXPXPALXPXGGGRXXXGPTGPPXXRPXXPPXSAPXXPXXXXPPXXPEKXXX 362
PP P P P P G + + P PP + P PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 361 XPPQP 347
PP P
Sbjct: 414 TPPVP 418
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.27
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Frame = -1
Query: 523 PPXXPXPALXPXGGGRXXXGPTGPPXXRPXXPPXSA---PXXPXXXXPPXXPEKXXXXPP 353
PP P A P PT PP PP SA P P PP P P
Sbjct: 1690 PPVRPQSAAPPQ-----MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Query: 352 QPG 344
PG
Sbjct: 1745 NPG 1747
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 1174 GGXPXPPPXXPPGXXXXXXXXXPPGXPRVXXG 1269
GG P PPP PPG PP P V G
Sbjct: 759 GGPPPPPP--PPGVAGAGPPPPPPPPPAVSAG 788
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 861 PXXPGPPPXXGGXXPPPXP 917
P P PPP G PPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +3
Query: 870 PGPPPXXGGXXPPPXP----GWAXPXXXPXPXXGXPGXXXXFXP 989
P P P GG PPP P G P P P G + P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/63 (26%), Positives = 18/63 (28%)
Frame = -1
Query: 637 TPGXXXXPPXXPKQXXXXXPAXSPXSGXTXGXPPXXGEPPXXPXPALXPXGGGRXXXGPT 458
TP P P P P G PP PP P PA+ G P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP----PPPPPPPAVSAGGSRYYAPAPQ 798
Query: 457 GPP 449
P
Sbjct: 799 AEP 801
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Frame = -3
Query: 1178 PPPXXPRGXXXXXGXXRSPXPXP-PXXXXPXXAPPXXXXXXXXPPXEXPP 1032
PPP P P P P P P PP PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Frame = -3
Query: 1130 RSPXPXPPXXXXPXXAP-----PXXXXXXXXPPXEXPPXGXXXREXXGGPP 993
+SP P PP P AP P PP PP G PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = +3
Query: 843 PXGXLRPXXPGPP--PXXGGXXPPPXP-GWAXPXXXPXPXXGXP 965
P G P PG P P PP P G A P P P G P
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYP 543
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +3
Query: 345 PGWGGXXXXFSGXXGGXXXXGXXGALXGGXXGRXXXXXXXXXXXXXXXXGXSAGXGXXGG 524
PG G F G G G GG G G G G GG
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263
Query: 525 SPXXGGXP 548
P G P
Sbjct: 264 GPGGHGGP 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,931
Number of Sequences: 5004
Number of extensions: 36167
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -