Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N23
(1316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 33 0.45
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 30 3.2
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 30 3.2
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 30 3.2
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 30 3.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 4.2
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 9.6
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 9.6
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 9.6
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 33.1 bits (72), Expect = 0.45
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 875 PPXQPXPXPXXPXN*XXXSXTRXXTQXXPPGPQPXXNPXP 994
P P P P P N T T+ PP P P NP P
Sbjct: 227 PVTAPAPNPPAPENTTAKVETTKPTKAAPPAPTPVPNPVP 266
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 619 PPG-RASQKSTLKSEVAKPDRTIKIPGRFPLXSSLGRSPV-PTLPPXRIPVRLS 774
PPG RA++ S E P RT +PGR L SL SPV P PP + R S
Sbjct: 261 PPGQRATRWSHTYGEQRAP-RTSSLPGRTVLAQSLVGSPVLPRHPPPIVQDRPS 313
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 619 PPG-RASQKSTLKSEVAKPDRTIKIPGRFPLXSSLGRSPV-PTLPPXRIPVRLS 774
PPG RA++ S E P RT +PGR L SL SPV P PP + R S
Sbjct: 459 PPGQRATRWSHTYGEQRAP-RTSSLPGRTVLAQSLVGSPVLPRHPPPIVQDRPS 511
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 619 PPG-RASQKSTLKSEVAKPDRTIKIPGRFPLXSSLGRSPV-PTLPPXRIPVRLS 774
PPG RA++ S E P RT +PGR L SL SPV P PP + R S
Sbjct: 527 PPGQRATRWSHTYGEQRAP-RTSSLPGRTVLAQSLVGSPVLPRHPPPIVQDRPS 579
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 30.3 bits (65), Expect = 3.2
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 619 PPG-RASQKSTLKSEVAKPDRTIKIPGRFPLXSSLGRSPV-PTLPPXRIPVRLS 774
PPG RA++ S E P RT +PGR L SL SPV P PP + R S
Sbjct: 459 PPGQRATRWSHTYGEQRAP-RTSSLPGRTVLAQSLVGSPVLPRHPPPIVQDRPS 511
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 959 PPGPQPXXNPXPPRXGLXGXAXKNPXXGXGXPXGXPXKKXP 1081
PPGPQ P P G P G P G P P
Sbjct: 720 PPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPP 760
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical protein
F25H8.5c protein.
Length = 732
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 830 RCRSXAXQXGPXCTNPPXQPXPXPXXPXN*XXXSXTRXXTQXXPPGPQPXXNPXPPRXG 1006
RCR+ Q P P P P P + P PQP P P R G
Sbjct: 82 RCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTG 140
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical protein
F25H8.5b protein.
Length = 369
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 830 RCRSXAXQXGPXCTNPPXQPXPXPXXPXN*XXXSXTRXXTQXXPPGPQPXXNPXPPRXG 1006
RCR+ Q P P P P P + P PQP P P R G
Sbjct: 82 RCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTG 140
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical protein
F25H8.5a protein.
Length = 780
Score = 28.7 bits (61), Expect = 9.6
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +2
Query: 830 RCRSXAXQXGPXCTNPPXQPXPXPXXPXN*XXXSXTRXXTQXXPPGPQPXXNPXPPRXG 1006
RCR+ Q P P P P P + P PQP P P R G
Sbjct: 82 RCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQPYPQRTG 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,851
Number of Sequences: 27780
Number of extensions: 280641
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3683964012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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