Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N22
         (1243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   3.1  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   5.4  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   5.4  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   9.4  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 504 TYFCSSIVCSLLYCWSSQ*ETFGQSKCNWFKTSVHAIFSNLYNKIY 367
           +Y C S +  + +CW+      G S  N F   +H  F    N++Y
Sbjct: 147 SYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHD-FETTSNRVY 191


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 434 WPNVSY-WELQQ*RRLHTMLLQKY 502
           +PNV + W LQ  ++LHT+L+QK+
Sbjct: 340 YPNVLWLWNLQN-KKLHTVLIQKH 362


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 898 GQGRIYXSXSSLQRLEDLHSGVGLLLFECIQIFHWSLACRP 776
           G   +  S  +  RL D+H+GV LL+ E      +S+AC+P
Sbjct: 277 GDYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQP 317


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 423 NWFKTSVHAIFSNLYNKIYDFSIVWIIC 340
           N+F+T  H I+   Y   Y F + W  C
Sbjct: 57  NFFRTLGHYIYVGAYPTRYAFLVFWSFC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,339,734
Number of Sequences: 5004
Number of extensions: 90378
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)