Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N20
(1225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.004
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.004
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.011
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.015
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.015
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 35 0.026
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.061
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.081
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.081
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.11
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.11
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.11
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.14
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 32 0.19
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.33
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.57
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 30 0.57
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.75
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.75
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.99
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 1.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 3.0
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 4.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 7.0
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 383
+YVG L + L F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 384 ACSAMNGTEMLGATLKVE 437
A +++NG+ G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +3
Query: 264 KXEALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATLK 431
K + LE F K+GK+ + + G FAF+ ++ + AE+A +++NGTE+ G +
Sbjct: 120 KPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIA 179
Query: 432 VE 437
V+
Sbjct: 180 VD 181
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 252 VEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 431
V+ ++ + E +KYGK+ + V N G F++FEN AE A + ++ G T+K
Sbjct: 526 VQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIK 585
Query: 432 VEI 440
I
Sbjct: 586 ASI 588
Score = 30.7 bits (66), Expect = 0.43
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 398
R+ V + + E ++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 399 NGTEMLGATLKV 434
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
TR++VG + E + F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 408 EMLGATLKVEISR 446
E +G+ + VE +R
Sbjct: 61 EFMGSRIVVEPAR 73
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
G R+ V L E + + L+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Query: 405 TEMLG 419
+ G
Sbjct: 157 EVIKG 161
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 389
R+YVGGL I+ LE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 390 SAMNGTEMLGATLKVEISR 446
S ++ G+ L++E +R
Sbjct: 66 SYLSNATFKGSKLRIEEAR 84
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.011
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 392
GT++ + L + ++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 393 AMNGTEMLGATLKVE 437
A+ T +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 395
R+++ L + L+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 396 MNGTEMLGATLKV 434
++ G L V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 31.1 bits (67), Expect = 0.33
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 339 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 449
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 35.5 bits (78), Expect = 0.015
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 401
+YV L G A+ F YG + +W+ L+P A + +E+L A A A++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALH 56
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.5 bits (78), Expect = 0.015
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 401
+YV G +G++ L F+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 402 G--TEMLGATLKVEISRK 449
G E G L+VE +++
Sbjct: 69 GRRLERGGGVLRVEWAKQ 86
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 34.7 bits (76), Expect = 0.026
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 LERXFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 446
LE F YGK+ V L G AF+ F+NL+ A A + G + G + ++ S+
Sbjct: 46 LEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSK 104
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.5 bits (73), Expect = 0.061
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGT 407
+++ L I E + F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 408 EMLGATLKV 434
+ L V
Sbjct: 74 NFMDRYLVV 82
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.081
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
VYVG + + E L+ F G +N V + + P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 399 NGTEMLGATLKVEISR 446
NG+ + LKV R
Sbjct: 116 NGSMLHERPLKVTPKR 131
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.1 bits (72), Expect = 0.081
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEA 377
V++G L + +E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 413
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 414 LGATLKVEIS 443
+ V IS
Sbjct: 648 FFGSDPVCIS 657
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
+++ L K +ER F +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 399 NGTEMLGATLKVEISR 446
G + G + V++ R
Sbjct: 162 AGLMLNGRRIVVDVER 177
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 383
RV+VG L K + F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 384 ACSAMNGTEMLGATLKVEISR 446
A +NG + + V+ +R
Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
Score = 29.5 bits (63), Expect = 0.99
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNS-VWVALNPP----------------GFAFIEFE 362
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 363 NLQEAEDACSAMNGTEMLGATLKVE 437
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 261 IKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
+ E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 398
+YVG L + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 399 NGTEMLGATLKVEISRK 449
N T + G ++ S++
Sbjct: 142 NYTLIKGRPCRIMWSQR 158
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 395
++Y+ L + + + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 396 MNGTEMLGATLKVEIS 443
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
+YVG L G + + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 399 NGTEMLGATLKVEI 440
+ + G L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 30.3 bits (65), Expect = 0.57
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 339 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
GF F EF + Q+ E AC +N ++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.9 bits (64), Expect = 0.75
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 219 SGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 383
+ G V+VG + + + + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 384 ACSAMNGTEMLGATLKVE 437
A +N +E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.9 bits (64), Expect = 0.75
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 401
V+VG L + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 402 GTEMLGATLKV 434
+ + ++V
Sbjct: 68 YSILCDRCIRV 78
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.5 bits (63), Expect = 0.99
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
VYVG L E + F K G++ + + ++ P GF F+E+ Q+A D+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 399 NGTEM 413
+ T +
Sbjct: 94 SRTSL 98
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 401
+YVG L L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 402 GTEMLGATLKV 434
G G L++
Sbjct: 342 GYRYGGRPLQL 352
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 3.0
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 270 EALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
E LE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 435 EISR 446
+ S+
Sbjct: 318 DFSQ 321
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 392
+++VGG+ E F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVW 320
+YVG + + E + + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,407
Number of Sequences: 5004
Number of extensions: 42228
Number of successful extensions: 146
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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