Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N20
(1225 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 81 2e-15
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 81 2e-15
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 81 2e-15
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 58 1e-08
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 58 1e-08
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 53 5e-07
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 53 5e-07
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 53 5e-07
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 46 4e-05
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 46 4e-05
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 46 4e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 45 1e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 45 1e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 45 1e-04
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 44 3e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 43 4e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 42 0.001
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 42 0.001
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 40 0.003
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 40 0.003
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 39 0.008
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 39 0.008
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 38 0.014
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 38 0.019
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 38 0.019
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 38 0.019
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 37 0.025
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.058
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.058
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.058
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.058
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.058
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.058
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 36 0.077
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 36 0.077
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 36 0.077
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 36 0.077
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 36 0.077
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 36 0.077
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 36 0.077
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 35 0.10
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.10
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.10
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.10
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.10
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.10
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 35 0.10
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 35 0.13
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 35 0.13
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.18
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.54
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.54
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.95
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.95
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 1.3
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 1.3
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 31 1.3
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 31 1.3
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 31 1.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.7
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 31 1.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 1.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.7
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 2.2
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 2.2
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 31 2.2
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 31 2.2
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 29 5.1
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 29 5.1
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 29 5.1
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 5.1
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 29 5.1
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 29 6.7
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 51/71 (71%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
+VYVGGL + LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 411 MLGATLKVEIS 443
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 51/71 (71%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
+VYVGGL + LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 411 MLGATLKVEIS 443
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 80.6 bits (190), Expect = 2e-15
Identities = 32/71 (45%), Positives = 51/71 (71%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
+VYVGGL + LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 411 MLGATLKVEIS 443
+ G +VE+S
Sbjct: 64 ICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 58.0 bits (134), Expect = 1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +3
Query: 213 MXSGGT---RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 380
M GG+ +VYVG L ++ + +E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 381 DACSAMNGTEMLGATLKVEISR 446
DA A +G E G ++VE +R
Sbjct: 61 DAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 58.0 bits (134), Expect = 1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +3
Query: 213 MXSGGT---RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP-PGFAFIEFENLQEAE 380
M GG+ +VYVG L ++ + +E F KYG++ V + P FAF+EFE+ ++AE
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAE 60
Query: 381 DACSAMNGTEMLGATLKVEISR 446
DA A +G E G ++VE +R
Sbjct: 61 DAVRARDGYEFDGRRIRVEFTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 52.8 bits (121), Expect = 5e-07
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G + + +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 411 MLGATLK--VEISR 446
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 52.8 bits (121), Expect = 5e-07
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G + + +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 411 MLGATLK--VEISR 446
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 52.8 bits (121), Expect = 5e-07
Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G + + +ER YGK+N++ + GFAF++FE+ ++AEDAC ++G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 411 MLGATLK--VEISR 446
M G++++ VE++R
Sbjct: 60 MEGSSMRLVVEMAR 73
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 270 EALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
+A+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 42 DAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 49.6 bits (113), Expect = 4e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
RVY+G L +E F YGKL+ V + GF F++F++ ++A+DA +NG E
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKE 59
Query: 411 MLGATLKVEISRK 449
+ G + +E R+
Sbjct: 60 LCGERVILEFPRR 72
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 49.6 bits (113), Expect = 4e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G L + + +E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 411 MLGATLKVEISR 446
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 49.6 bits (113), Expect = 4e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G L + + +E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 411 MLGATLKVEISR 446
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 49.6 bits (113), Expect = 4e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 410
R+Y+G L + + +E F YG++ V L GF F+EF++ ++AEDA +NG E
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 411 MLGATLKVEISR 446
+ G + ++ S+
Sbjct: 61 LGGERVILDYSK 72
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +3
Query: 219 SGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 383
SG VYVG E L F G++N+V + + P GFAFIEF A+
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 384 ACSAMNGTEMLGATLKVEISRK 449
A MNG E G L+V ++ K
Sbjct: 62 AVEQMNGAEFNGRPLRVNLANK 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 46.4 bits (105), Expect = 4e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 398
T VYV + E LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 399 NGTEMLGATLKVEISR 446
+ + + G LK+ + R
Sbjct: 273 HDSTIEGTDLKLHVCR 288
Score = 44.4 bits (100), Expect = 2e-04
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +3
Query: 195 HKSSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFE 362
HK+ G +YV L E + + L++ F+ YG + S V + GF F+ FE
Sbjct: 306 HKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 365
Query: 363 NLQEAEDACSAMNGTEMLGATLKVEISRK 449
+EA A + MN + L V I ++
Sbjct: 366 KPEEATSAVTEMNSKMVCSKPLYVAIGQR 394
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 46.4 bits (105), Expect = 4e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 398
T VYV + E LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 212
Query: 399 NGTEMLGATLKVEISR 446
+ + + G LK+ + R
Sbjct: 213 HDSTIEGTDLKLHVCR 228
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 195 HKSSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFE 362
HK+ G +YV L E + + L++ F+ YG + S V + GF F+ FE
Sbjct: 246 HKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 305
Query: 363 NLQEAEDACSAMNGTEMLGATLKVEISRK 449
+EA A + MN + L V I+++
Sbjct: 306 KPEEATSAVTEMNSKMVCSKPLYVAIAQR 334
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 46.4 bits (105), Expect = 4e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 398
T VYV + E LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 209
Query: 399 NGTEMLGATLKVEISR 446
+ + + G LK+ + R
Sbjct: 210 HDSTIEGTDLKLHVCR 225
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 195 HKSSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFE 362
HK+ G +YV L E + + L++ F+ YG + S V + GF F+ FE
Sbjct: 243 HKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 302
Query: 363 NLQEAEDACSAMNGTEMLGATLKVEISRK 449
+EA A + MN + L V I+++
Sbjct: 303 KPEEATSAVTEMNSKMVCSKPLYVAIAQR 331
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 46.4 bits (105), Expect = 4e-05
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAM 398
T VYV + E LE+ F K+G + S V GF F+ F N +EAE A A+
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 399 NGTEMLGATLKVEISR 446
+ + + G LK+ + R
Sbjct: 273 HDSTIEGTDLKLHVCR 288
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 195 HKSSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFE 362
HK+ G +YV L E + + L++ F+ YG + S V + GF F+ FE
Sbjct: 306 HKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 365
Query: 363 NLQEAEDACSAMNGTEMLGATLKVEISRK 449
+EA A + MN + L V I+++
Sbjct: 366 KPEEATSAVTEMNSKMVCSKPLYVAIAQR 394
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 392
+R+YVG + I+ + L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 393 AMNGTEMLGATLKV 434
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 34.3 bits (75), Expect = 0.18
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 395
RVYV + + L+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 396 MNGTEMLGATLK 431
MN ++ G L+
Sbjct: 268 MNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 392
+R+YVG + I+ + L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 393 AMNGTEMLGATLKV 434
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 35.9 bits (79), Expect = 0.058
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 395
RVYV + + L+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 396 MNGTEMLGATLKV 434
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 44.8 bits (101), Expect = 1e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACS 392
+R+YVG + I+ + L R FD +G + S+ ++ +P FAF+E+E + A A
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQE 161
Query: 393 AMNGTEMLGATLKV 434
+MNG + G LKV
Sbjct: 162 SMNGQMLGGRNLKV 175
Score = 35.9 bits (79), Expect = 0.058
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 395
RVYV + + L+ F+ +G++ +A P G F ++EF NL +A +
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 396 MNGTEMLGATLKV 434
MN ++ G L+V
Sbjct: 268 MNMFDLGGQYLRV 280
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 43.6 bits (98), Expect = 3e-04
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 398
+YVGG E + + L F +G + ++ + ++ GF F+EF+ ++A A M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 399 NGTEMLGATLKVEISR 446
N +E+ G T++V +R
Sbjct: 73 NESELFGKTIRVNFAR 88
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 43.2 bits (97), Expect = 4e-04
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 195 HKSSXTMXSGGTR-VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIE 356
+KSS R V+VG + + + + F K G + S+ + + P G+ FIE
Sbjct: 6 YKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIE 65
Query: 357 FENLQEAEDACSAMNGTEMLGATLKVE 437
F ++Q AE A +NG E+ G L+V+
Sbjct: 66 FPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.5 bits (93), Expect = 0.001
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 213 MXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 377
M S G VYVG + E + F G +N+V + + P GFAF+EF A
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Query: 378 EDACSAMNGTEMLGATLKVEISRK 449
+ A +NG G L+V + K
Sbjct: 61 QRAVEQLNGVAFNGRNLRVNYANK 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 41.5 bits (93), Expect = 0.001
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 389
G V+V + E + + F +YGK+ ++ + L+ G+A +E+E +EA +A
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
Query: 390 SAMNGTEMLGATLKVE 437
N T++LG +KV+
Sbjct: 114 DQSNDTDLLGQNVKVD 129
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 398
V+VG L + + E L+ F K+G+++ V G+ F+ F N Q AE+A + M
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 196
Query: 399 NG 404
NG
Sbjct: 197 NG 198
Score = 36.7 bits (81), Expect = 0.033
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + L F YG + V + +AF+ +E + A A MNG
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGK 295
Query: 408 EMLGATLKVEISR 446
EM G ++ R
Sbjct: 296 EMAGNQVRCSWGR 308
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + + + R FD++G +N V G+AF++FE + A A MN
Sbjct: 256 TSVYVGNIAN-LGEDEIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNA 313
Query: 408 EMLGATLK 431
++ G ++
Sbjct: 314 DIGGQIVR 321
Score = 33.1 bits (72), Expect = 0.41
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYG---KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
++V L I E L F++ G K ++ LN P +AF+EF + +A A + NG
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNG 100
Query: 405 TEMLGATLKV 434
E+L + V
Sbjct: 101 RELLEKEMHV 110
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.008
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 222 GGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDAC 389
G T V V L I + + F+ +G++ + + ++ GFA I F N +A+ +C
Sbjct: 125 GPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSC 184
Query: 390 SAMNGTEMLGATLKVEISRK 449
+N E+ G +++ I ++
Sbjct: 185 EQLNNFELAGRCIRLSIKQE 204
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 38.7 bits (86), Expect = 0.008
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +3
Query: 222 GGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDAC 389
G T V V L I + + F+ +G++ + + ++ GFA I F N +A+ +C
Sbjct: 270 GPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSC 329
Query: 390 SAMNGTEMLGATLKVEISRK 449
+N E+ G +++ I ++
Sbjct: 330 EQLNNFELAGRCIRLSIKQE 349
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.3 bits (85), Expect = 0.011
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 240 VGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 404
V L + + + L F K G++ +++A + P GFAF+ FE+ +A A + +N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 405 TEMLGATLKVEISR 446
M LKVE +R
Sbjct: 240 IRMYHMVLKVEWTR 253
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.9 bits (84), Expect = 0.014
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
G VYVG + L F + G +++V + + P GFAF+EF A+ A
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 390 SAMNGTEMLGATLKVEISR 446
NG + G L+V +++
Sbjct: 63 DQFNGVDFNGRALRVNLAQ 81
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 37.9 bits (84), Expect = 0.014
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 395
T V+V E + E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 396 MNGTEMLGATLKVEISR 446
+N + + G K+ + R
Sbjct: 298 LNDSILEGTDCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 37.9 bits (84), Expect = 0.014
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 395
T V+V E + E L F K+G++ S V + P GF F+ F + A A
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 396 MNGTEMLGATLKVEISR 446
+N + + G K+ + R
Sbjct: 298 LNDSILEGTDCKLSVCR 314
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 37.5 bits (83), Expect = 0.019
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
R++VGGL E L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 37.5 bits (83), Expect = 0.019
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
R++VGGL E L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 252 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 37.5 bits (83), Expect = 0.019
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 404
R++VGGL E L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 229 RLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 37.1 bits (82), Expect = 0.025
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 389
G +YVG + + + L F+K GK+ + + ++P G+AF+ + N ++A A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 390 SAMNGTEM-LGATLKVEIS 443
+G E+ G LKV +S
Sbjct: 259 KTYDGHEISTGKPLKVNVS 277
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 35.9 bits (79), Expect = 0.058
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
VYVG + G E +E+ F G ++ V + + P GFA++EF + ++A AM
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AM 138
Query: 399 NGTEMLGATLKVEISR 446
+ + G +KV+ R
Sbjct: 139 TDSLLRGRQIKVDPKR 154
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.058
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAM 398
+YVGGL E + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 399 NGTEMLGATLKV 434
N ++ G +KV
Sbjct: 75 NMIKLYGKPIKV 86
Score = 31.9 bits (69), Expect = 0.95
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDA 386
G ++VG L + + L F +G + V + GFAFI F + + ++ A
Sbjct: 99 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 158
Query: 387 CSAMNGTEMLGATLKVEISRK 449
AMNG + + V + K
Sbjct: 159 LEAMNGQFLCNRAITVSYAFK 179
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.058
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 201 SSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN---PPGFAFIEFENLQ 371
S+ + G R++V + + L+ F+K+G ++ V + N GF F+ E Q
Sbjct: 144 STSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQ 203
Query: 372 EAEDACSAMNGTEMLGATLKV 434
+AE A ++G+ + G ++V
Sbjct: 204 DAERARQELHGSMIEGRKIEV 224
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.058
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAM 398
+YVGGL E + L + G + SV V N GF F+EF ++A+ A +
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 399 NGTEMLGATLKV 434
N ++ G +KV
Sbjct: 85 NMIKLYGKPIKV 96
Score = 31.9 bits (69), Expect = 0.95
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 225 GTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDA 386
G ++VG L + + L F +G + V + GFAFI F + + ++ A
Sbjct: 109 GANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTA 168
Query: 387 CSAMNGTEMLGATLKVEISRK 449
AMNG + + V + K
Sbjct: 169 LEAMNGQFLCNRAITVSYAFK 189
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 35.9 bits (79), Expect = 0.058
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMN 401
++VG + L R F+ YGK+ + + A P G+AFIE+ + E A +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 402 GTEMLGATLKVEISR 446
G ++ G L V+ R
Sbjct: 166 GIKVDGKRLVVDYER 180
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.058
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 201 SSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN---PPGFAFIEFENLQ 371
S+ + G R++V + + L+ F+K+G ++ V + N GF F+ E Q
Sbjct: 144 STSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQ 203
Query: 372 EAEDACSAMNGTEMLGATLKV 434
+AE A ++G+ + G ++V
Sbjct: 204 DAERARQELHGSMIEGRKIEV 224
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMN 401
R+YV + + + L F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 402 GTEMLGATLKV 434
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + + + + F +G++ V + G+AF++F+N A A MN
Sbjct: 128 TSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQ 185
Query: 408 EMLGATLK 431
++ G ++
Sbjct: 186 DVGGQLVR 193
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 398
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 399 NG 404
NG
Sbjct: 84 NG 85
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + + + + F +G++ V + G+AF++F+N A A MN
Sbjct: 138 TSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQ 195
Query: 408 EMLGATLK 431
++ G ++
Sbjct: 196 DVGGQLVR 203
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 398
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 399 NG 404
NG
Sbjct: 94 NG 95
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + + + + F +G++ V + G+AF++F+N A A MN
Sbjct: 241 TSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQ 298
Query: 408 EMLGATLK 431
++ G ++
Sbjct: 299 DVGGQLVR 306
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNG 404
+YVG L + + + F++ G + V N P +AF+EF + +A A MN
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNK 106
Query: 405 TEMLGATLKV 434
+L +KV
Sbjct: 107 RLLLDREMKV 116
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 398
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 399 NG 404
NG
Sbjct: 197 NG 198
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
T VYVG + + + + + F +G++ V + G+AF++F+N A A MN
Sbjct: 209 TSVYVGNIAS-LTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQ 266
Query: 408 EMLGATLK 431
++ G ++
Sbjct: 267 DVGGQLVR 274
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAM 398
V+VG L + + L F +G ++ V G+ F+ + +EAE A M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 399 NG 404
NG
Sbjct: 165 NG 166
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 35.5 bits (78), Expect = 0.077
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +3
Query: 219 SGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP------PGFAFIEFENLQEAE 380
S RV + L + LE F YG + +V + + G+ ++E++NL++AE
Sbjct: 130 SPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAE 189
Query: 381 DACSAMNGTEMLGATLKVEIS 443
+ M+G ++ G + VE++
Sbjct: 190 KSIKHMDGGQIDGMAVHVEMT 210
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 35.5 bits (78), Expect = 0.077
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMN 401
R+YV + + + L F YG++ SV + N GF F+ ++++ E A +A++
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 402 GTEMLGATLKV 434
+ + G ++V
Sbjct: 112 ESHVQGRIIEV 122
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.10
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 201 SSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP---PGFAFIEFENLQ 371
+S + G R++V + + L F+K G + V + N GF F+ +N
Sbjct: 91 TSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPD 150
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+A+ A + NGT + G ++V ++
Sbjct: 151 DADRARAEFNGTTIEGRRVEVNLA 174
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 440
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.1 bits (77), Expect = 0.10
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +3
Query: 201 SSXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNP---PGFAFIEFENLQ 371
+S + G R++V + + L F+K G + V + N GF F+ +N
Sbjct: 91 TSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPD 150
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+A+ A + NGT + G ++V ++
Sbjct: 151 DADRARAEFNGTTIEGRRVEVNLA 174
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 413
++ L + E LE F+++ L + + N PG AF+EF+ A A + +N ++
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKI 193
Query: 414 LGA-TLKVEISRK 449
T++V+ ++K
Sbjct: 194 SAEHTMRVDYAKK 206
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 34.7 bits (76), Expect = 0.13
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 231 RVYVGGLVEGI-KXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 407
RV++G + I + + F +GK+ +V GF F++F A+++C ++NG
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGM 142
Query: 408 EMLGATLKVEIS 443
L V ++
Sbjct: 143 SWKACCLDVHLA 154
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.18
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 339 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 392
T + + L +G+ E + F G++ S + + G+ F+ + ++A A S
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 393 AMNGTEMLGATLKVEISR 446
+ NG + T+KV +R
Sbjct: 102 SFNGLRLQNKTIKVSYAR 119
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.7 bits (71), Expect = 0.54
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 395
R+++ L K + L+ F KYG+++ V V ++ GFA +EF + A A SA
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 396 MNGTEMLGATLKV 434
++G G + +
Sbjct: 340 LDGYVFKGRMMHI 352
Score = 30.3 bits (65), Expect = 2.9
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 228 TRVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 395
TR+ V L + L + F+KYG+++ + GFAF+ F + A +A +
Sbjct: 3 TRLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAK 62
Query: 396 MNGTEMLGATLKVEISR 446
N T L VE R
Sbjct: 63 SNQTFFNSKKLTVEECR 79
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 32.7 bits (71), Expect = 0.54
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 339 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
GFA++ FEN Q+ A S +NG + LKV
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.95
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 389
+V++GGL E +++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.95
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 389
+V++GGL E +++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 446
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 342 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 446
F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSA 395
+V+VGGL + L F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 396 MNGT 407
T
Sbjct: 171 TKQT 174
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 395
+++VGG+ + E L F +YG++ V + GFAF+EF + + A +A
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 396 MNGTEMLGATLKVE 437
T + G +++V+
Sbjct: 90 REQT-IKGKSVEVK 102
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSA 395
+V+VGGL + L F+++GK++ + W FAFI FE + A+ A S
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ 170
Query: 396 MNGT 407
T
Sbjct: 171 TKQT 174
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 395
+++VGG+ + E L F +YG++ V + GFAF+EF + + A +A
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAA 89
Query: 396 MNGTEMLGATLKVE 437
T + G +++V+
Sbjct: 90 REQT-IKGKSVEVK 102
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 401
++ + EG + E ++ F ++ L V N FAFIE+E+ +E A A++
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
R+YV G+ E + L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 31.1 bits (67), Expect = 1.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNG 404
+Y+ L I E + F K+G + + V G AF+ +E++ +A+ AC ++G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
R+YV G+ E + L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
R+YV G+ E + L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 133
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
R+YV G+ E + L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 231 RVYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 389
R+YV G+ E + L F KYG + + L+ P GF F+ F++ ++ D C
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 398
+YVG L K + + F + G + V + L+ P GF F+E+ ++AE A +
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNI 98
Query: 399 NGTEM 413
+ T M
Sbjct: 99 SNTRM 103
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 288 FDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 443
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.7 bits (66), Expect = 2.2
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 261 IKXEALERXFDKYGKLNSVWVALNPPGF-AFIEFENLQEAEDACSAMNGTEMLG--ATLK 431
I + + + + GK+ V V P A +EFE+++ A+ A AMNG ++ TLK
Sbjct: 134 IDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLK 193
Query: 432 VEISR 446
VE ++
Sbjct: 194 VEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.7 bits (66), Expect = 2.2
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 261 IKXEALERXFDKYGKLNSVWVALNPPGF-AFIEFENLQEAEDACSAMNGTEMLG--ATLK 431
I + + + + GK+ V V P A +EFE+++ A+ A AMNG ++ TLK
Sbjct: 134 IDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADIYSGCCTLK 193
Query: 432 VEISR 446
VE ++
Sbjct: 194 VEFAK 198
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 270 EALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
E LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 435 EISR 446
+ S+
Sbjct: 315 DFSQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 270 EALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
E LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 435 EISR 446
+ S+
Sbjct: 315 DFSQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 29.5 bits (63), Expect = 5.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3
Query: 270 EALERXFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 434
E LE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
Query: 435 EISR 446
+ S+
Sbjct: 246 DFSQ 249
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 204 SXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQ 371
S + ++++GGL + + ++ +G L + + + N G+AF E+ +
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPT 342
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+ A + +NG ++ L V+++
Sbjct: 343 LTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 204 SXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQ 371
S + ++++GGL + + ++ +G L + + + N G+AF E+ +
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPT 342
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+ A + +NG ++ L V+++
Sbjct: 343 LTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 204 SXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQ 371
S + ++++GGL + + ++ +G L + + + N G+AF E+ +
Sbjct: 258 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPT 317
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+ A + +NG ++ L V+++
Sbjct: 318 LTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 204 SXTMXSGGTRVYVGGLVEGIKXEALERXFDKYGKLNSVWVAL----NPPGFAFIEFENLQ 371
S + ++++GGL + + ++ +G L + + + N G+AF E+ +
Sbjct: 261 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPT 320
Query: 372 EAEDACSAMNGTEMLGATLKVEIS 443
+ A + +NG ++ L V+++
Sbjct: 321 LTDQAIAGLNGMQLGDKQLVVQLA 344
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 29.1 bits (62), Expect = 6.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 234 VYVGGLVEGIKXEALERXFDKYGKLNSVW---VALNPPGFAFIEFENLQEAEDACSAMNG 404
+YV E + E LE F + G + V V + FA +EFE+ A MNG
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 405 TEMLGATLKVE 437
+ L+V+
Sbjct: 75 VRLFNQELQVK 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,907
Number of Sequences: 27780
Number of extensions: 233307
Number of successful extensions: 674
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -