Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N18
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    43   1e-04
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    38   0.003
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    29   1.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   2.3  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    26   9.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   9.4  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = +3

Query: 405 YKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDDFLGKDSDILLGVHCTHGLNRTG 584
           Y  +  +  GI HK++      +P  + VKEF+D  ++    + D ++ VHC  GL RTG
Sbjct: 238 YDKKTFENVGIRHKEMYFEDGTVPELSLVKEFIDLTEEV---EEDGVIAVHCKAGLGRTG 294

Query: 585 YMVCRYM 605
            ++  Y+
Sbjct: 295 CLIGAYL 301


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = +3

Query: 540 ILLGVHCTHGLNRTGYMVCRYMRDRLGMSGKEAI-----KKFERARGYAIE---RIVYTS 695
           + L VHC  G  RTG ++C Y+    G++ K+++     K+  R  G  I    R VY  
Sbjct: 123 LTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKRMVRGHGLTISSQIRYVYYI 182

Query: 696 DLLKQNP 716
           ++LKQ P
Sbjct: 183 EILKQFP 189


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 583 PVRFNPCVQCTPNRISESFPRKSSTASINSFTLFS 479
           P+R+N    CTPN I+    +KS   S  ++ L +
Sbjct: 590 PIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLN 624


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 723 DKERTNSKSATKRRHDFEYRSP 788
           D+ R NS+S  +R HD EYR P
Sbjct: 240 DEYRRNSRSDYRRPHDDEYRRP 261


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 639 IKKFERARGYAIERIVYTSDLLKQNPAIDKERTNSKSA 752
           IK+ E   G  +    YT D+L    A++K+RT  K A
Sbjct: 90  IKQVESEAGTLVICKNYTGDILHFGMALEKQRTAGKKA 127


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = -1

Query: 574 FNPCVQCTPNRISESFPRKSSTASINSFTLFSGGKIRPGIMIFLCKIPAAFTSSGL*YLS 395
           F+P    +PN +S S P   ++ + N  TLFS   I           P+    S L   S
Sbjct: 222 FSPFATSSPNFLSTSTPAPPNSNNANPSTLFS--SIPSSRHTTSNHFPSNSAQSSL--FS 277

Query: 394 VFVKSMTAPSLGIAS 350
              + +TA  LG AS
Sbjct: 278 PTARPLTARKLGFAS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,094,679
Number of Sequences: 5004
Number of extensions: 81572
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)