Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N18
(1240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 70 4e-12
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 67 2e-11
05_01_0120 - 828834-831143 33 0.35
03_01_0558 + 4155220-4155642,4156292-4156348,4157030-4157165,415... 30 4.3
11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534 29 5.7
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 29 5.7
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 29 7.6
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641... 29 10.0
01_05_0203 - 19241442-19241710,19241845-19242055,19242602-192431... 29 10.0
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 69.7 bits (163), Expect = 4e-12
Identities = 46/120 (38%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Frame = +3
Query: 357 IPKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENK-VKEFMDAVDDFLGKD 533
I +G VIDLTNT +YY P + GI H KI GR P+N+ V F+ V FL +
Sbjct: 160 IGMIGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQ 219
Query: 534 SDI----LLGVHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDL 701
+ VHCTHG NRTG+M+ Y+ EAI F + R I + Y L
Sbjct: 220 KQSKNPKYILVHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEAL 279
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 67.3 bits (157), Expect = 2e-11
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Frame = +3
Query: 366 LGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENK-VKEFMDAVDDFLGKDSDI 542
+G VIDLTNT +YY P + G + KI GR P+N+ V F+ V FL +
Sbjct: 135 IGLVIDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQS 194
Query: 543 ----LLGVHCTHGLNRTGYMVCRY-MRDRLGMSGKEAIKKFERAR 662
+ VHCTHG NRTG+M+ Y MR +L S EA+ F + R
Sbjct: 195 RNPKYILVHCTHGHNRTGFMIVHYLMRTQLS-SVTEALNIFAQRR 238
>05_01_0120 - 828834-831143
Length = 769
Score = 33.5 bits (73), Expect = 0.35
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 552 VHCTHGLNRTGYMVCRYMRDRLGMSGKEAIKKFERARGYAIERIVYTSDLLK 707
VHC G++R+ +V Y+ R G S +A + + ARG A + + LL+
Sbjct: 228 VHCCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARGIANPNMGFACQLLQ 279
>03_01_0558 +
4155220-4155642,4156292-4156348,4157030-4157165,
4158378-4158514,4159509-4159632,4160111-4160568
Length = 444
Score = 29.9 bits (64), Expect = 4.3
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 330 WDIPALLEAIPKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDA 509
W P L +A +LG V+D +Y KAA + H+ + + + P + V ++A
Sbjct: 332 WARPYLTDA-RRLGRVMDRNLAGQYPAKAAQKAAALAHRCVSLNPKSRPHMSAV---VEA 387
Query: 510 VDDFLGKDSDILLG 551
++ L D D L+G
Sbjct: 388 LEPLLALDDDCLVG 401
>11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534
Length = 312
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 142 CNLKNYLNSVYVEDSLYAICLNFP 213
C K Y NS + E SLY +CL P
Sbjct: 181 CRGKFYFNSFFTEISLYMVCLKTP 204
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 29.5 bits (63), Expect = 5.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 360 PKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDDF 521
P +G IDL + D Y+KPE V + + ++ G PP +D VD F
Sbjct: 361 PAVGPSIDLLSGDDYFKPEPVNS-----QALVSVGN--PPAASANNTLDLVDMF 407
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +3
Query: 447 KIIMPGRILPPENKVKEFMDAVDDFLGKDSDILLGVHCTHGLNRTGYMVCRYMRDRLGMS 626
K+++ I PE + KE + + D LGK+ IL+ + + G +V ++ + MS
Sbjct: 150 KVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSI--MGGLVIQFGQKVFDMS 207
Query: 627 GKEAIKKFE 653
K K+ E
Sbjct: 208 IKTRAKQME 216
>02_05_0907 -
32663544-32663623,32663673-32663863,32664065-32664162,
32664406-32664519,32664589-32664646,32664778-32664867,
32665414-32665505,32665898-32666008,32666120-32666374,
32666512-32666577,32666725-32666853
Length = 427
Score = 28.7 bits (61), Expect = 10.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 366 LGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGR 467
+GA IDL + ++Y K V A +L KK++ GR
Sbjct: 169 VGAHIDLVSKEEYGKIGSVALADLLKKKLLEEGR 202
>01_05_0203 -
19241442-19241710,19241845-19242055,19242602-19243181,
19243204-19244189
Length = 681
Score = 28.7 bits (61), Expect = 10.0
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 354 AIPKLGAVIDLTNTDKYYKPEDVKAAGILHKKIIMPGRILPPENKVKEFMDAVDDFLGKD 533
A PK+G+ + L + +DV + +K RI+ P + ++++ G D
Sbjct: 558 ARPKVGSGLKLFFAEFSNDDDDVSFCCTVSRKSKHGTRIMHPAH-------PIENYCGGD 610
Query: 534 SDILLGVHCTHGLNRTGYMVC-RYMRDRLGMSGKEAI 641
D + H TH L + C + +R+GM G + I
Sbjct: 611 MDFIEMAHGTHKLTNARIISCGKCAGNRVGMCGDDYI 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,362,249
Number of Sequences: 37544
Number of extensions: 465994
Number of successful extensions: 956
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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