Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N17
         (1316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.27 
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    31   0.27 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   0.41 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.9  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    28   2.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   5.8  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   7.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 962 PPXPRGGGXFXXXXXPPPPPPPXXXKK 882
           PP P     F     PPPPPPP   KK
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = -3

Query: 435 IKFIFIYEIKQNTVIFFKIVRYALYLKYLKWCNITIITKFVYKKVWRHYWGCNCIGIMII 256
           + FIFIY    N ++F+ I+    +  Y  +  IT   +   KK  R     N      I
Sbjct: 14  LPFIFIYLSVANKIMFYCILNERAFKHYKTYRRITDCPEIKNKKSRRK----NQRNSSSI 69

Query: 255 SHSAPSRFSVFTDLSLFTPRYNCEP 181
             S P++FS++  +  F   + C P
Sbjct: 70  GLSNPNKFSIYIYIYFFFYSFLCSP 94


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect(2) = 0.41
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 917  PPPPPPPXXXKK 882
            PPPPPPP   +K
Sbjct: 1096 PPPPPPPAEVEK 1107



 Score = 24.2 bits (50), Expect(2) = 0.41
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 962  PPXPRGGGXFXXXXXPPPPPPP 897
            P  P           PPPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPPP 1101


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 962 PPXPRGGGXFXXXXXPPPPPPP 897
           PP P   G       PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +3

Query: 1101 KXLXXXXPXXPXXXXGXXXGXXPXPPPPXXXXKXXPXXGGXPPGXXXXXXPPXXPXXP 1274
            K L    P  P           P P PP       P     PPG      PP  P  P
Sbjct: 726  KLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 224 SRIFLCLHQGIIVNPIKIIVNATKTAVKMSVCQNSSILNYLG 99
           SR++    + +I++ I I + +    +K+S  QN  ++NYLG
Sbjct: 498 SRVYRLCTKSLILSEINIQIGSGLFGIKVSNDQNYLLVNYLG 539


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 443 NGYLMESKCY---FYITQIKNEIPKIILRCVSSLFIFYCIYY 559
           + Y  +  C+   F +T   N  PK +LR  SSL++FY + Y
Sbjct: 835 DNYKADHYCFTLDFILTDCVNS-PKPLLRRASSLWLFYIVRY 875


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 253 AYNHDTYTIASPVMPPYFFVNELS 324
           A+ +DT+T  + V+PP FF N  S
Sbjct: 335 AFIYDTFTKRNAVLPPPFFKNRSS 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,426
Number of Sequences: 5004
Number of extensions: 63073
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)