Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N16
(1252 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 30 0.77
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 2.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 28 2.3
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 3.1
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 5.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 7.2
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 27 7.2
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch... 26 9.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 9.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 9.5
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +1
Query: 373 YYRETNESHI--LSKAEESVQNNF---HDYYDFRPTSVFI 477
Y R + S I LSKAE N HDYYDFRP ++ I
Sbjct: 134 YVRNGSSSGIIALSKAETDTYWNAILNHDYYDFRPIAIKI 173
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 2.3
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 165 GIGS-PIAGSHSERPYRILR*NLRDSFCEQPRRANVPRRSPSIYQHGIPTAIPSNSGV 335
G+GS P+ S + R+ +L S PR PRRSPS IP+ +P GV
Sbjct: 324 GVGSVPLPAPTSSQSLRLG--SLHRSRSPSPRSGR-PRRSPSPSHLSIPSTLPPADGV 378
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 28.3 bits (60), Expect = 2.3
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +1
Query: 247 NNHGVLTFRADLPQFINTEFPLPYPAIAAFYSNVDTTDEGAIYYRETNESHILSKAEE-- 420
N + VL D QFI+T + LP+ + S+V +T + + +T++ +SK+ E
Sbjct: 415 NTNDVLYSITDSKQFISTIYILPF-LKSTIVSSVQSTLQ--VCGAQTSDRLYISKSYEFC 471
Query: 421 -SVQNNFH-DYYD 453
SV+NNF D++D
Sbjct: 472 SSVKNNFGIDFWD 484
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 139 PELDQRLPRGSEVPSPEVTLNVPIVFYDETYETVFVNNHGVLTF 270
PELD + + S VP E N ++F DE E ++ VL +
Sbjct: 588 PELDHLIFKYSRVPLSEDPQNSIVIFIDENSEASTISKGVVLKY 631
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 181 SPEVTLNVPIVF-YDETYET--VFVNNHGVLTFRADLPQFINTEFPLPYPAIAAFYSNVD 351
+PE+ L + +V D YE F N LT P+F + EF Y A A +Y +D
Sbjct: 303 APELYLKMLVVGGLDRVYEIGRQFRNEGADLTHN---PEFTSIEF---YQAYADYYDLMD 356
Query: 352 TTDE 363
TT+E
Sbjct: 357 TTEE 360
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = -2
Query: 210 DRDVQSDFRRWDFR---SPGQPLVQL 142
D +VQSD + W F+ G+PL+Q+
Sbjct: 78 DPEVQSDMKHWPFKVIEKDGKPLIQV 103
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 508 TLHDRKNSYQVAVISNGTESFVELLYPEREIQWIQKETDALSLPD 642
TL D Y V I+ G + LL R + W + + L +PD
Sbjct: 328 TLVDALEGYNVKSITGGEHHTLALLEDGRVLAWGRDDRHQLGIPD 372
>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 99 RRRDYPGPVLPLWAGVGPEVAQGIGSPIAGSH 194
R+ P PVLP +++QG+ SP+ SH
Sbjct: 11 RKVSKPSPVLPFDVSNIGDLSQGVHSPLGISH 42
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 228 GFIVEYD--RDVQSDFRRWDFRSPGQP-LVQLRPI 133
GF+V + +V+++ W F+S GQP + LRPI
Sbjct: 1487 GFVVNVEIYAEVKTENNSWIFKSIGQPGSMHLRPI 1521
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 418 ESVQNNFHDYYDFRPTSVFITTWLDVTYTSTLHDRKNSYQV 540
++V HDYY+ PT ++ T + T + +S+++
Sbjct: 782 QAVNMKLHDYYEKEPTEIYKTVSVTSTQIMPAVTKMSSFEL 822
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,406,227
Number of Sequences: 5004
Number of extensions: 89682
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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