Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N16
         (1252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    32   0.82 
01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734           31   1.4  
10_07_0100 + 12861588-12862601                                         30   3.3  

>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 32.3 bits (70), Expect = 0.82
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 351 VDVGVERRYCWVWQWEFRVDKLREIGAER*HAVVVHKNCLVGFIVEYDRDVQSDFRRWDF 172
           ++V + +R+ W W+ E+R D LR+    R    + HK  L     +YD D+   FRR D 
Sbjct: 809 LEVFLVKRFGWTWKDEYRAD-LRKYAILR---GICHKVGLELVTKDYDMDMPHPFRRSDI 864

Query: 171 RS 166
            S
Sbjct: 865 IS 866


>01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734
          Length = 294

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +3

Query: 141 GVGPEVAQGIGSPIAGSHSERPYRILR*NLRDSFCEQPRRANVPRRSPSIYQHGIPTAIP 320
           GVG   A    SP A S +  P R+    L  S C Q   A  PRR PS +      ++ 
Sbjct: 89  GVGGGSASSACSPPACSSNRTPARLSVLLLCSSACSQYCAAPPPRRQPSSHLR----SLS 144

Query: 321 SNSGVLLQRRHHRRRSNLLQRDQR--ISHPI 407
           S S  ++    H   S+ LQ +++  +SHPI
Sbjct: 145 SFSLTVIANGTHPICSSSLQPNKKLGLSHPI 175


>10_07_0100 + 12861588-12862601
          Length = 337

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 DTTDEGAIYYRETNESHILSKAEESVQNNFHDYYDFRPT 465
           D+ DEG    R  N +   +K  +   N++H YY ++P+
Sbjct: 41  DSMDEGGEDGRTRNAASAAAKKRQEAANSYHYYYCYKPS 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,733,074
Number of Sequences: 37544
Number of extensions: 632589
Number of successful extensions: 1881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1878
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)