Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N14
(1256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 316 3e-87
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 233 3e-62
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 182 9e-47
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 142 7e-35
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 142 9e-35
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 139 6e-34
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 123 5e-29
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 114 3e-26
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 107 3e-24
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 100 5e-22
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 98 2e-21
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 94 4e-20
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 91 2e-19
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 89 9e-19
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 87 5e-18
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 81 3e-16
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 75 2e-14
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 74 5e-14
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 60 8e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 52 2e-07
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 49 2e-06
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 37 0.007
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.047
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.58
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 2.4
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 28 3.1
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 27 4.1
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 5.4
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 5.4
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 316 bits (777), Expect = 3e-87
Identities = 149/201 (74%), Positives = 172/201 (85%), Gaps = 1/201 (0%)
Frame = +3
Query: 186 PEYDXLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIW 365
PEYD LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT +L GKT+KLQIW
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIW 62
Query: 366 DTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNK 545
DTAGQERFRTITSSYYRGAHGIIIVYD TDQDSF+NVKQWL+EIDRYA + VN+LLVGNK
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNK 122
Query: 546 CDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAP 725
D+ KKVV++S AK++A+ L IPFLETSAK+STNVEQAF+TM+ +IK R+G + ++
Sbjct: 123 SDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSN 182
Query: 726 A-GHVKIDQGQPIDTGKSSCC 785
A VK+ QG + S+CC
Sbjct: 183 AKSSVKVGQGTNVSQSSSNCC 203
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 233 bits (571), Expect = 3e-62
Identities = 102/166 (61%), Positives = 136/166 (81%)
Frame = +3
Query: 192 YDXLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDT 371
YD L KLLLIGDSGVGKSCLLLRF++D++T S+I+TIG+DFKIRT++L+GK IKLQIWDT
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65
Query: 372 AGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD 551
AGQERFRTIT++YYRGA GI+++YD TD+ SF NV+ W ++++A +NV K+L+GNKCD
Sbjct: 66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125
Query: 552 LTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 689
++ V F + A++LG+ FLE SAK + NV++AF T+A EIK
Sbjct: 126 CEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 182 bits (443), Expect = 9e-47
Identities = 93/181 (51%), Positives = 120/181 (66%)
Frame = +3
Query: 189 EYDXLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWD 368
EYD LFK +LIGDSGVGKS LL+RF + + STIGV+F R + L+ K IK QIWD
Sbjct: 6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWD 65
Query: 369 TAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKC 548
TAGQER+R ITS+YYRGA G +IVYD T Q SF NV +WL+E+ +A N+ +LVGNK
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKT 125
Query: 549 DLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPA 728
DL + V A+ +A + + F+ETSA +++NVE+AF T+ EI V S A
Sbjct: 126 DLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185
Query: 729 G 731
G
Sbjct: 186 G 186
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 142 bits (345), Expect = 7e-35
Identities = 70/174 (40%), Positives = 105/174 (60%), Gaps = 5/174 (2%)
Frame = +3
Query: 192 YDXLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLN----GKTIKLQ 359
YD L K++L G SG GKSCLL RF + + + T+G+DF R + + K IKLQ
Sbjct: 6 YDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQ 65
Query: 360 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVG 539
IWDTAGQE+FR++ +YYRGA G ++VYD T++DSF + WL +I A + +L G
Sbjct: 66 IWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAG 125
Query: 540 NKCDLTTKKVVDFSTAKQYAEQLGIPFL-ETSAKNSTNVEQAFMTMAAEIKARV 698
+K DL ++ V A ++ + I ETS+ +NVE+ F+++ + I R+
Sbjct: 126 SKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITRI 179
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 142 bits (344), Expect = 9e-35
Identities = 69/158 (43%), Positives = 104/158 (65%)
Frame = +3
Query: 204 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 383
FKL+ +G+ VGK+ L+ RF D + +Y +TIG+DF +T+ L +T++LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 384 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTK 563
RFR++ SY R + IIVYD T+ +SF N ++W+E++ D+V +LVGNK DL K
Sbjct: 72 RFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADK 131
Query: 564 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMA 677
+ V ++ A++L I +ETSAK NV+ F +A
Sbjct: 132 RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIA 169
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 139 bits (337), Expect = 6e-34
Identities = 73/194 (37%), Positives = 110/194 (56%), Gaps = 2/194 (1%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKT-IKLQIWDTAGQE 383
KL+L+GDS VGKS L+LRF D + + STIG F +T+ ++ T +KL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 384 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLT-T 560
R++++ YYR A+ I+VYD T S K W++E+ R A + + L GNK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 561 KKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTGAAPAGHVK 740
++ V+ + A+ YA + + F ETSAK + NV + F +A ++ A V
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVN 195
Query: 741 IDQGQPIDTGKSSC 782
+ + +P SC
Sbjct: 196 LSEARPAAQPSGSC 209
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 123 bits (297), Expect = 5e-29
Identities = 62/165 (37%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Frame = +3
Query: 201 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQ 380
L K++++G+SGVGK+ ++ ++ + +++ Y +TIG DF + V ++ K + LQ+WDTAGQ
Sbjct: 8 LLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
Query: 381 ERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC----DNVNKLLVGNKC 548
ERF+++ ++YRGA ++VYD + SF + W +E A + +L+GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKV 127
Query: 549 DL-TTKKVVDFSTAKQYAEQLG-IPFLETSAKNSTNVEQAFMTMA 677
D+ K++V S A + + G IP+ ETSAK + NV++AF T+A
Sbjct: 128 DVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVA 172
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 114 bits (274), Expect = 3e-26
Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 7/164 (4%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
K++++GDSGVGK+CL+ +F + ++ Y +TIG DF + V ++ K + LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDN---VNKLLVGNKCDL- 554
F+++ ++YRGA +IVY+ + SF +V+ W +E + ++VGN+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKD 129
Query: 555 TTKKVVDFSTAKQYAEQ---LGIPFLETSAKNSTNVEQAFMTMA 677
+K+ V A Y + + E SAK +TNV F T++
Sbjct: 130 ASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVS 173
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 107 bits (257), Expect = 3e-24
Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Frame = +3
Query: 204 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 383
+KL+++GD GVGKS L ++ + + Y TI ++ + +++G+ L + DTAGQE
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQE 67
Query: 384 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYAC-DNVNKLLVGNKCDLTT 560
+ + Y R G ++VY+ T + SF + + ++I R D +LV NKCDL
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEA 127
Query: 561 KKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 689
++VV + +Q A+ + ++ETSAK NVE+AF ++ I+
Sbjct: 128 ERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIR 170
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 100 bits (239), Expect = 5e-22
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 5/193 (2%)
Frame = +3
Query: 186 PEYDXLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIW 365
P+ FKL+L+GD G GK+ + R + + YI+T+GV+ N I +W
Sbjct: 4 PQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVW 63
Query: 366 DTAGQERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNK 545
DTAGQE+ + YY II++D T + ++ NV W ++ R C+N+ +L GNK
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCGNK 122
Query: 546 CDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTG--A 719
D+ +KV + A + + + + + SAK++ N E+ F+ +A ++ VG P+ A
Sbjct: 123 VDVKERKVK--AKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL---VGNPNLEFVA 177
Query: 720 APA---GHVKIDQ 749
+PA V++DQ
Sbjct: 178 SPALAPPEVQVDQ 190
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 98.3 bits (234), Expect = 2e-21
Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 14/182 (7%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
KL+++GD GK+CLL+ F+ T+ E Y+ T+ ++ + V+++G+ I+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDL--- 554
+ + Y +H ++I + +S NV++ W+ E+ + C N+ LLVG K DL
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHF-CSNLPILLVGCKVDLRND 125
Query: 555 ---------TTKKVVDFSTAKQYAEQLG-IPFLETSAKNSTNVEQAFMTMAAEIKARVGP 704
T++K + F + A+++G +LE SAK + V + F T A + P
Sbjct: 126 PKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASMLKFKP 185
Query: 705 PS 710
S
Sbjct: 186 AS 187
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 93.9 bits (223), Expect = 4e-20
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
++ ++G VGKS L +++ ++ + ESY TI F + + G+ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI-DRYACDNVNKLLVGNKCDLTTK 563
+ + S + G HG ++VY T + SF VK ++I + + V ++VGNK DL +
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQ 126
Query: 564 KVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPSTG 716
+ V K A + + E SA+++ NV +AF + +EI+ + P G
Sbjct: 127 RAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEIEKQANPSPPG 177
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 91.5 bits (217), Expect = 2e-19
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
KL+++GD GK+CLL+ F+ T+ E Y+ T+ ++ + V+++G+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDLTT- 560
+ + Y +H I+I + DS NV++ W+ E+ + C ++ LLV K DL
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHF-CSSLPILLVACKADLRND 125
Query: 561 -KKVVDFSTAKQY----------AEQLG-IPFLETSAKNSTNVEQAF--MTMAAEIKARV 698
K + + S Q+ A+++G +LE SAK + V + F T AA +K +
Sbjct: 126 PKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAMLKHKP 185
Query: 699 G-PPSTG 716
PS+G
Sbjct: 186 KVKPSSG 192
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 89.4 bits (212), Expect = 9e-19
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 10/179 (5%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
K++++GD GK+ LL F + + Y TI ++ I + ++G +I+L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYACDNVNKLLVGNKCDL--T 557
+ + S Y H I+I + +DS NV +WL E+ C V +LV KCDL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSS-NCPGVKLVLVALKCDLRGA 132
Query: 558 TKKVVDFSTAKQYAEQL-------GIPFLETSAKNSTNVEQAFMTMAAEIKARVGPPST 713
++ VD S Y E L + +LE SAK + V +AF T AA + P T
Sbjct: 133 DEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF-TEAARVALAAQPRGT 190
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 87.0 bits (206), Expect = 5e-18
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR-TVDLNGKTIKLQIWDTAGQE 383
KL+++GD G GK+CLL+ F+ T+ E Y+ T+ ++ T N K I+L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 384 RFRTITSSYYRGAHGIIIVYDCTDQDSFSNV-KQWLEEIDRYACDNVNKLLVGNKCDLTT 560
+ + Y ++ I++ + S +NV ++W E+ + C +LVG K DL
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHF-CPRTPIVLVGLKADLRK 134
Query: 561 KK------------VVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAF 665
+ V + A+ A + P++E SAK +T V + F
Sbjct: 135 DRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 81.0 bits (191), Expect = 3e-16
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
KL+++GD GK+ LL F + Y+ T+ ++ + ++GK+++L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVK-QWLEEIDRYACDNVNKLLVGNKCDLTTK 563
+ + Y AH I++ + DS NV +W+EEI+ C NV +LVG K DL +
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINT-LCPNVPFILVGMKADLRSD 127
Query: 564 KV 569
V
Sbjct: 128 PV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 74.9 bits (176), Expect = 2e-14
Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
K+ +IGDS +GK+ L++ + ++ E T+GV+F +T+ + I IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD--LTT 560
F + A I+ ++D + + + +++K+W + + V +L+G K D +T
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAV-PILIGTKYDHFMTF 130
Query: 561 KKVVDFSTAKQ---YAEQLGIPFLETSAKNSTNVEQAFMTMAAEI 686
+ KQ YA+ + + S +S NV++ F + A++
Sbjct: 131 PREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKV 175
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 73.7 bits (173), Expect = 5e-14
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQ-WLEEIDRYACDNVNKLLVGNKCDLTTK 563
+ + Y ++ + T SF NVK+ W E+ + C V L+VG + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHH-CPGVPCLIVGTQIDLRDD 122
Query: 564 KVVDFSTAKQYAEQL 608
V A+Q+ L
Sbjct: 123 PSVQQKLARQHQHPL 137
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 59.7 bits (138), Expect = 8e-10
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
++L++G GK+ +L + +S ++ V F + TV K IK +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLK---LNQSVVTIPTVGFNVETVTY--KNIKFNVWDVGGQDK 77
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI--DRYACDNVNKLLVGNKCDL 554
R + Y+ G G+I V D D + S +Q L I DR D + L++ NK DL
Sbjct: 78 IRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCL-LLVLANKQDL 134
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
++L++G GK+ +L + + I TIG F + TV+ + I +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDNVNKLLVGNKCDL 554
R + Y++ GII V D D++ S + L+ ++ + L+ NK DL
Sbjct: 74 IRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDL 130
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 48.8 bits (111), Expect = 2e-06
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
++LL+G GK+ +L ++ E T G F+IRT+++ G ++ IWD GQ+
Sbjct: 18 RVLLLGLDNAGKTTILKCLLNEDVNE-VSPTFG--FQIRTLEVEG--LRFTIWDIGGQKT 72
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEI---DRYACDNVNKLLVGNKCD-- 551
R +Y+ II V D D + L+E+ ++ ++ L++ NK D
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSI--LVLANKSDVS 130
Query: 552 --LTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTNVEQAFMTMAAEIK 689
L+++++ +Y F SA N++ A +A ++K
Sbjct: 131 GALSSEEISKILNISKYKSSHWRIF-SVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQER 386
K+L +G GK+ LL +D ++ + + +L ++ +D G ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDR-----LAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQ 76
Query: 387 FRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEE-IDRYACDNVNKLLVGNKCD 551
R + Y+ +GI+ + DC D + S K L+ + V L++GNK D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.047
Identities = 33/129 (25%), Positives = 59/129 (45%)
Frame = -2
Query: 685 ISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFTLSQA 506
I+++ V+N+ + + V + P S+ L +T+ + S +L +S+ T S A
Sbjct: 2820 ITSSTVLNSSTPITS--SSVLNSSTPITSSTAL----NTSTPITSSSVLNSSTPITSSTA 2873
Query: 505 *RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLPFKST 326
+ +S ++LN S + S T++ P+ VLN S P S P S+
Sbjct: 2874 LNTSTSITSSSVLNSSTPITSSTVVNTSTPI--TSSSVLNSSTPITSSTVVNTSTPITSS 2931
Query: 325 VLILKSTPI 299
++ STPI
Sbjct: 2932 TVVNSSTPI 2940
Score = 33.1 bits (72), Expect = 0.083
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S A + +S ++LN S + S T++ P+
Sbjct: 1279 NTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPI--TSSS 1336
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1337 VLNSSTPITSSTVVNSSTPITSSTVVNTSTPI 1368
Score = 33.1 bits (72), Expect = 0.083
Identities = 30/96 (31%), Positives = 42/96 (43%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S L TS+ T S S + T+LN S + S T + P+
Sbjct: 2056 SVLNSST-PITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPI-- 2112
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2113 TSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPI 2148
Score = 33.1 bits (72), Expect = 0.083
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S A + +S ++LN S + S T++ P+
Sbjct: 2623 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPI--TSSS 2680
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2681 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2712
Score = 33.1 bits (72), Expect = 0.083
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S A + +S ++LN S + S T++ P+
Sbjct: 2947 NTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPI--TSSS 3004
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 3005 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3036
Score = 31.9 bits (69), Expect = 0.19
Identities = 35/133 (26%), Positives = 59/133 (44%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ +VL S+T + S ++ TS+ T
Sbjct: 788 TSTPITSSSVLNSSTPITS--STVLNSSTPITSS---SVLNSST-PITSSTVVNTSTPIT 841
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
S S + ++LN S + S T + P+ VLN S P S P
Sbjct: 842 SSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPI--TSSSVLNSSTPITSSTVVNTSTP 899
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 900 ITSSTVVNSSTPI 912
Score = 31.9 bits (69), Expect = 0.19
Identities = 30/103 (29%), Positives = 45/103 (43%)
Frame = -2
Query: 607 SCSAYCLAVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMI 428
S S +VL S+T + S +L +S+ T S S + ++LN S + S T +
Sbjct: 2421 STSITSSSVLNSST-PITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALN 2479
Query: 427 PCAPL*YDEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
P+ VLN S P S P S+ ++ STPI
Sbjct: 2480 TSTPI--TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2520
Score = 31.9 bits (69), Expect = 0.19
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S ++ TS+ T S S + T++N S + S T + P+
Sbjct: 2728 SVLNSST-PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPI-- 2784
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2785 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2820
Score = 31.9 bits (69), Expect = 0.19
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S S + ++LN S + S T++ P+
Sbjct: 3211 NTSTPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPI--TSSS 3268
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 3269 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Score = 31.5 bits (68), Expect = 0.25
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S +L +S+ T S S + T LN S + S +++ P+
Sbjct: 412 SVLNSST-PITSSSILNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI-- 468
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 469 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 504
Score = 31.5 bits (68), Expect = 0.25
Identities = 33/133 (24%), Positives = 59/133 (44%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ L +T+ + S +L +S+ T
Sbjct: 632 TSTPITSSSVLNSSTPITS--SSVLNSSTPITSSTAL----NTSTPITSSSVLNSSTPIT 685
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
S A + + ++LN S ++ S T + P+ VLN S P S P
Sbjct: 686 SSTALNTSTPITSSSVLNSSTAITSSTALNTSTPI--TSSSVLNSSTPITSSTALNTSTP 743
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 744 ITSSSVLNSSTPI 756
Score = 31.5 bits (68), Expect = 0.25
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S +L +S+ T S S + T++N S + S T + P+
Sbjct: 1084 SVLNSST-PITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPI-- 1140
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1141 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 1176
Score = 31.5 bits (68), Expect = 0.25
Identities = 29/95 (30%), Positives = 42/95 (44%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
VL S+T + S L TS+ T S S + ++LN S + S T++ P+
Sbjct: 2093 VLNSST-PITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPI--T 2149
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2150 SSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 2184
Score = 31.1 bits (67), Expect = 0.33
Identities = 33/133 (24%), Positives = 58/133 (43%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ L +T+ + S +L +S+ T
Sbjct: 1724 TSTPITSSTVVNSSTPITS--STVVNSSTPITSSTAL----NTSTPITSSSVLNSSTPIT 1777
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
S A + + ++LN S + S T + P+ VLN S P S P
Sbjct: 1778 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI--TSSSVLNSSTPITSSTVVNTSTP 1835
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 1836 ITSSTVVNSSTPI 1848
Score = 30.7 bits (66), Expect = 0.44
Identities = 26/96 (27%), Positives = 44/96 (45%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
++L S+T + S +L +S+ T S + + ++LN S + S T++ P+
Sbjct: 760 SILNSST-PITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLNSSTPI-- 816
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 817 TSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 852
Score = 30.7 bits (66), Expect = 0.44
Identities = 32/133 (24%), Positives = 58/133 (43%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ L +T+ + S +L +S+ T
Sbjct: 944 TSTPITSSSVLNSSTPITS--STVLNSSTPITSSTAL----NTSTPITSSSVLNSSTPIT 997
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
S + + ++LN S ++ S T + P+ VLN S P S P
Sbjct: 998 SSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPI--TSSSVLNSSTPITSSTVVNTSTP 1055
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 1056 ITSSTVVNSSTPI 1068
Score = 30.7 bits (66), Expect = 0.44
Identities = 27/95 (28%), Positives = 43/95 (45%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
VL S+T + S +L +S+ T S + + T++N S + S T++ P+
Sbjct: 1397 VLNSST-PITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPI--T 1453
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1454 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 1488
Score = 30.7 bits (66), Expect = 0.44
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S +L +S+ T S S + ++LN S + S T + P+
Sbjct: 2116 SVLNSST-PITSSSVLNSSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPI-- 2172
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2173 TSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPI 2208
Score = 30.7 bits (66), Expect = 0.44
Identities = 31/129 (24%), Positives = 57/129 (44%)
Frame = -2
Query: 685 ISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFTLSQA 506
I+++ V+N+ + + V + P S+ L +T+ + S +L +S+ T S
Sbjct: 2448 ITSSTVVNSSTPITS--SSVLNSSTPITSSTAL----NTSTPITSSSVLNSSTPITSSTV 2501
Query: 505 *RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLPFKST 326
+ + T++N S + S T++ P+ VLN S P S P S+
Sbjct: 2502 VNTSTPITSSTVVNSSTPITSSTVLNSSTPI--TSSSVLNSSTPITSSTVVNTSTPITSS 2559
Query: 325 VLILKSTPI 299
++ STPI
Sbjct: 2560 TVVNSSTPI 2568
Score = 30.7 bits (66), Expect = 0.44
Identities = 27/95 (28%), Positives = 42/95 (44%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
VL S+T + S +L +S+ T S + + T++N S + S T + P+
Sbjct: 2525 VLNSST-PITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSLTALNSSTPI--T 2581
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2582 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2616
Score = 30.3 bits (65), Expect = 0.58
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S + + +++LN S + S T++ P+
Sbjct: 559 NTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPI--TSSS 616
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 617 VLNSSTPITSSTALNTSTPITSSSVLNSSTPI 648
Score = 30.3 bits (65), Expect = 0.58
Identities = 28/96 (29%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S +L +S+ T S S + T LN S + S +++ P+
Sbjct: 592 SVLNSST-PITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI-- 648
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 649 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 684
Score = 30.3 bits (65), Expect = 0.58
Identities = 33/133 (24%), Positives = 60/133 (45%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ V+ S+T + S +L +S+ T
Sbjct: 1916 TSTPITSSSVLNSSTPITS--SSVLNSSTPITSS---TVVNSST-PITSSSVLNSSTPIT 1969
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
S A + + ++LN S + S +++ P+ VLN S P S P
Sbjct: 1970 SSTALNTSTPITSSSVLNSSTPITSSSVLNTSTPI--TSSSVLNSSTPITSSTVVNTSTP 2027
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 2028 ITSSTVVNSSTPI 2040
Score = 29.9 bits (64), Expect = 0.77
Identities = 26/95 (27%), Positives = 43/95 (45%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
V+ S+T + S ++ TS+ T S + + T++N S + S T++ P+
Sbjct: 1349 VVNSST-PITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPI--T 1405
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1406 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 1440
Score = 29.9 bits (64), Expect = 0.77
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S ++ TS+ T S S + T+LN S + S +++ P+
Sbjct: 1495 NTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPI--TSSS 1552
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1553 VLNSSTPITSSTVVNTSTPITSSSVVNSSTPI 1584
Score = 29.9 bits (64), Expect = 0.77
Identities = 26/95 (27%), Positives = 43/95 (45%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
V+ S+T + S ++ TS+ T S + + T++N S + S T++ P+
Sbjct: 2189 VVNSST-PITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPI--T 2245
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2246 SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2280
Score = 29.5 bits (63), Expect = 1.0
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S ++ TS+ T S S + T+LN S + S +++ P+
Sbjct: 1183 NTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPI--TSSS 1240
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
+LN S P S P S+ ++ STPI
Sbjct: 1241 ILNSSTPITSSSVLNSSTPITSSTVVNSSTPI 1272
Score = 29.5 bits (63), Expect = 1.0
Identities = 28/95 (29%), Positives = 41/95 (43%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
V+ S+T + S L TS+ T S S + T LN S + S +++ P+
Sbjct: 1841 VVNSST-PITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI--T 1897
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1898 SSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1932
Score = 29.5 bits (63), Expect = 1.0
Identities = 28/95 (29%), Positives = 41/95 (43%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
V+ S+T + S L TS+ T S S + T LN S + S +++ P+
Sbjct: 2033 VVNSST-PITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI--T 2089
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2090 SSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 2124
Score = 28.7 bits (61), Expect = 1.8
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S + + T++N S + S T + P+
Sbjct: 1807 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI--TSSS 1864
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1865 VLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1896
Score = 28.7 bits (61), Expect = 1.8
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S +L +S+ T S + + T++N S + S T + P+
Sbjct: 1999 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI--TSSS 2056
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2057 VLNSSTPITSSTALNTSTPITSSSVLNSSTPI 2088
Score = 28.3 bits (60), Expect = 2.4
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S +L +S+ T S + + +++N S + S T + P+
Sbjct: 1540 SVLNSST-PITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPI-- 1596
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 1597 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1632
Score = 27.5 bits (58), Expect = 4.1
Identities = 32/133 (24%), Positives = 54/133 (40%)
Frame = -2
Query: 697 TRALISAAIVMNACSTFVEFFADVSRNGMPSCSAYCLAVLKSTTFLVVKSHLLPTSSLFT 518
T I+++ V+N+ + + V + P S+ L T V + P +S
Sbjct: 1616 TSTPITSSSVLNSSTPITS--STVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTV 1673
Query: 517 LSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVMVLNRSCPAVSHICNFIVLP 338
++ + SS T++N S + S T + P+ VLN S P S P
Sbjct: 1674 VNTSTPITSS----TVVNSSTPITSSTALNTSTPI--TSSSVLNSSTPITSSTVVNTSTP 1727
Query: 337 FKSTVLILKSTPI 299
S+ ++ STPI
Sbjct: 1728 ITSSTVVNSSTPI 1740
Score = 27.5 bits (58), Expect = 4.1
Identities = 27/96 (28%), Positives = 42/96 (43%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S ++ TS+ T S S + T++N S + S T + +
Sbjct: 2320 SVLNSST-PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSI-- 2376
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2377 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2412
Score = 27.1 bits (57), Expect = 5.4
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = -2
Query: 586 AVLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*Y 407
+VL S+T + S L TS+ T S S ++ +++N S + S +++ +
Sbjct: 3064 SVLNSST-PITSSTALNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAI-- 3120
Query: 406 DEVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
+LN S P S P S+ ++ STPI
Sbjct: 3121 TSSSILNSSTPITSSSILNSSTPITSSTVVNSSTPI 3156
Score = 27.1 bits (57), Expect = 5.4
Identities = 26/95 (27%), Positives = 41/95 (43%)
Frame = -2
Query: 583 VLKSTTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YD 404
V+ S+T + S L TS+ T S S ++ T LN S + S +++ +
Sbjct: 3293 VVNSST-PITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAI--T 3349
Query: 403 EVMVLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
+LN S P S P S+ ++ STPI
Sbjct: 3350 SSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPI 3384
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = -2
Query: 574 STTFLVVKSHLLPTSSLFTLSQA*RSISSNHCFTLLNESWSVQSYTMMIPCAPL*YDEVM 395
+T+ + S ++ +S+ T S + + T++N S + S T + P+
Sbjct: 2263 NTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI--TSSS 2320
Query: 394 VLNRSCPAVSHICNFIVLPFKSTVLILKSTPI 299
VLN S P S P S+ ++ STPI
Sbjct: 2321 VLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2352
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQIWDTAGQE 383
K+LL+G SG GKS + + F++ ++ +D + V G + L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 384 RF 389
F
Sbjct: 63 AF 64
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.1 bits (62), Expect = 1.3
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Frame = +3
Query: 207 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLN---GKTIKLQIWDTAG 377
++++ GD GVGKS L+ E +++I F I ++ N + L + DT
Sbjct: 5 RVVICGDQGVGKSSLISALIQ----EDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQS 60
Query: 378 QERFRTITSSYYRGAHGIIIVYDCTDQDSFSNVKQWLEEIDRYACDNVNKLLVGNKCD 551
R ++ + A+ I +VY +D S+ V + R NV +L NK +
Sbjct: 61 DSNEREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSE 116
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +3
Query: 255 LRFADDTYTES--YISTIGVDFKIRTVDLNGKTIKLQIWDTAGQERFRTITSSYYRGAHG 428
LR+ D Y E +S + D+ GKT Q DT G F ++ + G
Sbjct: 176 LRYTDTHYLERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDG 235
Query: 429 IIIVYD 446
+++V D
Sbjct: 236 VVLVVD 241
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = +3
Query: 462 SFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKN 641
S S K+WL +++Y C + + ++G ++ +D S+ Q E L LE K+
Sbjct: 342 SHSTSKEWLSSLEQYHCTYLFRDVIG-------RRFLDQSSELQGIEILLKRVLEPYLKD 394
Query: 642 STNVEQAFMTMAAEIKARVGPPSTGAAPA 728
+ + + + A A + S G+A A
Sbjct: 395 QSKISEIAVKTAMASTADILSRSKGSATA 423
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 596 CGTTGHSVPRDVSEELYER 652
CGT G++ P V++ELY +
Sbjct: 254 CGTVGYAAPEIVNDELYSK 272
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 495 IDRYACDNVNKLLVGNKCDLTTKKVVDFSTAKQYAEQLGIPFLETSAKNSTN 650
+DR + + +G + D TTK+ D S + + + LG F+E K ST+
Sbjct: 127 VDRLVHKKLRWVTLGEQYDWTTKEYPDPSKSPGFPKDLG-DFVEKVVKESTD 177
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 213 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVDLNGKTIKLQI 362
+L+GD+ GK+C+L A + I + V+ T+DL G+ ++ I
Sbjct: 1873 ILVGDTATGKTCILRLLA--AIAGAKIKEMAVNSDTDTMDLIGEYEQIDI 1920
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +3
Query: 204 FKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIR---TVDLNGKTIKL 356
F +L++G+SG GKS L+ + D Y + S G DF + TV +N +++
Sbjct: 96 FNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTG-DFGVNPEPTVMINSSAVEI 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,771
Number of Sequences: 5004
Number of extensions: 64187
Number of successful extensions: 293
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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