Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N13
(1271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.26
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 29 1.0
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 29 1.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 2.4
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 2.4
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 27 4.2
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 27 5.5
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 27 7.3
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 9.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 9.7
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 9.7
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.26
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = -3
Query: 900 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 721
SAS TPLT SV S A SA +TST +S +++ + LP+++++S
Sbjct: 369 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
Query: 720 VPLSNSS 700
PLS+++
Sbjct: 423 TPLSSAN 429
Score = 31.5 bits (68), Expect = 0.26
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = -3
Query: 900 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTS 721
SAS TPLT SV S A SA +TST +S +++ + LP+++++S
Sbjct: 483 SASSTPLT-SVNSTSATSAS-----STPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 536
Query: 720 VPLSNSS 700
PLS+++
Sbjct: 537 TPLSSAN 543
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = -3
Query: 825 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQV 646
P+S S FCS +S+ C+++ T + L + N + F + + L
Sbjct: 50 PSSDISEFCSLIDFISQTCNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVL-----C 104
Query: 645 ILMFCPSTTLASLVILACTFPV 580
+++ T ++ + +L C FP+
Sbjct: 105 LVLLKNKTVISPITLLQCFFPL 126
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 813 RSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLY---FHVTSEYGLPINLQ 649
++ FC + C F+ R+PS L V + +FL F ++ E + INLQ
Sbjct: 12 KNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Frame = -3
Query: 900 SASYTPLTLSVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRP-----------CSFFSS 754
S S T L++S +S + P+S S+ S+ST+LS P S S
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISG 645
Query: 753 CTRLPSTALTSVPLSNSSFLY 691
+ + S++++++P+S+S Y
Sbjct: 646 SSSILSSSISTIPISSSLSTY 666
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 665 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERAD 820
KP+ + WK KKD +D T V G +L +N+ + + V L+ +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 256 SSYECPKLVNDCSGHRAHPRTGQL 327
S C K NDCSGH + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 2.4
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -3
Query: 798 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTS-EYGLPINLQVILMFCPST 622
++STV++ SS T ST +TS + NSS T+ PI +L ST
Sbjct: 3289 TSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN--SST 3346
Query: 621 TLASLVILACTFPVTIQALI 562
+ S IL + PVT +++
Sbjct: 3347 AITSSSILNSSTPVTSSSVL 3366
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 602 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 778
+T + +++ Q I + +P+ +W +E + +S V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166
Query: 779 DNTV 790
++ V
Sbjct: 167 EHAV 170
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +2
Query: 770 QGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPF 910
+ + NT+ + +N + D + +D T +K ++ WPF
Sbjct: 28 ESVSNTISLSENGQNQDLETVTTKESNVGDSDTTENIKSPFNGQWPF 74
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 248 ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 409
A ++T A ++ P T+ T ++V++ + ++G PF + L++P E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 867 TSAGVPPAGLHWYRPAS 817
T A +PP GL WYR S
Sbjct: 54 TKAKLPPFGLEWYRGCS 70
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 415 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 579
++Q+ S+ +PQ Q P Q Q + + RQLH Q+P T S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 630 PSTTLASLVILACTFPVTIQALICPVW 550
PST LAS I + P +I+ + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,895
Number of Sequences: 5004
Number of extensions: 59305
Number of successful extensions: 272
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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