Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N13
(1271 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 31 2.6
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 31 2.6
08_02_0574 - 18867623-18868033,18869751-18870209 30 4.5
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 29 5.9
04_04_1654 - 35075409-35075926,35076396-35078694 29 5.9
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 29 5.9
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 29 5.9
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 29 7.8
07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038 29 7.8
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 7.8
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 749 VQLEKNEQGLDNTVLVLQNAERADAGLYQCSPAGGTPADVTLRVKGVYDALWPFLGICAE 928
+QLE+ QG D + L+ + A+ G D RVK + P + CA+
Sbjct: 83 LQLEEKNQGCDASALISSPNDDAEKDAPDNMSLAGDGFDTVNRVKTAVEKACPGVVSCAD 142
Query: 929 VVVLCA 946
++ L A
Sbjct: 143 ILALAA 148
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 30.7 bits (66), Expect = 2.6
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 403 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 531
DR E A R GR Q + PE A LP+ P + RLR L
Sbjct: 29 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 4.5
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -3
Query: 873 SVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 730
SVT A +P AG ++ SA STST + C+ SS T LPST+
Sbjct: 82 SVTPAAIPCAG-----SSTTASAPTSTSTRAAPACTGRSSSTGLPSTS 124
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -3
Query: 423 LFFFHTISNESSGTARVQFKLNGRPTMYFKAS*LTSSWVGSVTGAIVDEFWALVRTPQAK 244
L HT+ ++ + T V F++ + +K+ + W+G G I D +W R+P+ +
Sbjct: 343 LLLLHTMHSKVAATTHVSFRVVHFQDLVYKSFGEIAVWLGGQYG-IHDSWWDCGRSPKGR 401
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 822 ASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 700
AS R AF + ++ S P FFS T L +L PL+ SS
Sbjct: 109 ASLRHAFLNNNSFRSIPADFFSGLTSLLVISLDQNPLNVSS 149
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +1
Query: 403 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 531
DR E A R GR Q + PE A LP P + RLR L
Sbjct: 31 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 798 CRTRSAPTPACTSAARPGARPPTSRSGSRA 887
CR R P PA + RP P +R+ +RA
Sbjct: 52 CRRRRVPAPAAAAETRPTRSPSRARARARA 81
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 762 FSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 631
FS +P+ LTS +Y+H +S YGL + L + C
Sbjct: 439 FSIDDTMPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482
>07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038
Length = 198
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 825 ACTSAARPGARPPTSRSGSRACTTRSGP 908
A +S A ARPP S +G A T RSGP
Sbjct: 45 ATSSCAAALARPPPSSAGYAAKTPRSGP 72
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 7.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +2
Query: 461 YELQNKGLTFQIKGRSNE------DDYGNYTCGLKNQTGHIKAW 574
Y + +GL F+I+ +E D +G +T +K + H+KAW
Sbjct: 608 YVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,972,022
Number of Sequences: 37544
Number of extensions: 442808
Number of successful extensions: 1934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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