Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N11
         (1269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    83   4e-16
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    47   2e-05
AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    30   3.0  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 40/82 (48%), Positives = 44/82 (53%)
 Frame = +3

Query: 267 YSDVASRPFFPGLVXYMSSGPVVPMVWEGLXVVXXGRRXTXAXNPADSXPXTXXRDLCIL 446
           Y D+  +PFFP L+ YMSSGPVV MVW+GL VV  GR    A NP  S P T   D CI 
Sbjct: 52  YQDLKDKPFFPSLIEYMSSGPVVAMVWQGLDVVKQGRSMLGATNPLASAPGTIRGDFCIQ 111

Query: 447 LGRXIXXGXXTXXXXXXEIXLW 512
            GR I  G         EI  W
Sbjct: 112 TGRNICHGSDAVDSANREIAHW 133



 Score = 38.3 bits (85), Expect = 0.011
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +1

Query: 127 RXXIMVRPDGVQRGXVGTIMERXEKKGIKQXGLK 228
           R  I ++PDGV RG VG I+ R E++G K   LK
Sbjct: 6   RTFIAIKPDGVHRGLVGKIIARFEERGYKLVALK 39


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +3

Query: 285 RPFFPGLVXYMSSGPVVPMVWEGLXVVXXGR 377
           +PFFP L+ YMSSGPVV M+WEG  VV   R
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVKRAR 63


>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 186 HNGAHXTTLYTIWSNHNSXTLTLFXHHDIXATW 88
           HN  H      +++NHN  T  +  HH + A W
Sbjct: 299 HNLIHSHLRRLLYANHNQITAIVMSHHVVRAVW 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,984,002
Number of Sequences: 27780
Number of extensions: 121424
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)