Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N10
         (1305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...   194   3e-50
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...   102   1e-22
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   5.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   5.7  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    26   10.0 

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score =  194 bits (472), Expect = 3e-50
 Identities = 85/140 (60%), Positives = 109/140 (77%)
 Frame = +1

Query: 574 GRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMTEDERY 753
           GR VRVY+DG++D+FH GH RQL+QAK VFPNV+LIVG+ +DQLTH  KG TVM + ER 
Sbjct: 91  GRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERA 150

Query: 754 EAVRHCRYVDEVVRDAPWEYDEEFLEKHKIDFLAHDDIPYTTEDXEDTYAMIKAKDMFVA 933
           EA+RHC++VDEV+ +APW    EFLE+HKIDF+AHDDIPY ++D  D Y  +K    F+ 
Sbjct: 151 EALRHCKWVDEVLENAPWVITPEFLEEHKIDFVAHDDIPYASDDSGDIYLPVKKVGKFIP 210

Query: 934 TQRTEGVSTSDIVXRXVXXY 993
           T+RTEGVSTSD++ R +  Y
Sbjct: 211 TKRTEGVSTSDLITRIIRDY 230


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score =  102 bits (244), Expect = 1e-22
 Identities = 50/140 (35%), Positives = 83/140 (59%)
 Frame = +1

Query: 559 LAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMT 738
           +A ++  K R++ DG  D FH GH+  + QAK +     L++G+ SD+     KG  VMT
Sbjct: 1   MASSSNIKHRLWLDGCMDFFHYGHSNAILQAKQLGET--LVIGIHSDEEITLNKGPPVMT 58

Query: 739 EDERYEAVRHCRYVDEVVRDAPWEYDEEFLEKHKIDFLAHDDIPYTTEDXEDTYAMIKAK 918
            +ER  +   C++VDEVV  AP+ +D E++ ++   ++ H D   T  + +D Y   KA 
Sbjct: 59  LEERCLSANTCKWVDEVVPSAPYVFDLEWMRRYGCQYVVHGDDISTDANGDDCYRFAKAA 118

Query: 919 DMFVATQRTEGVSTSDIVXR 978
           D ++  +RTEGVST++++ R
Sbjct: 119 DQYLEVKRTEGVSTTELLDR 138



 Score = 36.7 bits (81), Expect = 0.007
 Identities = 16/72 (22%), Positives = 36/72 (50%)
 Frame = +1

Query: 589 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMTEDERYEAVRH 768
           +Y DG +D+F + H   L+    +FP + ++ G+ +D+    +    ++   ER   +  
Sbjct: 205 IYIDGDWDLFTEKHISALELCTRMFPGIPIMAGIFADEKCFEKPMLNLL---ERILNLLQ 261

Query: 769 CRYVDEVVRDAP 804
           C+Y+  ++   P
Sbjct: 262 CKYISSILVGPP 273


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 845 SILCFSRNSSSYSHGASLTTSSTYLQCRTASYLSSSVIT 729
           S++     +S   + AS+++++TY    + S LSSSV T
Sbjct: 330 SVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFT 368


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 848 KSILCFSRNSSSYSHGASLTTSSTYLQCRTASYLSSSVITVLPLRLC-VSWSLHTPTIR* 672
           K ++  S N   Y H  S      Y   +  S ++ +++++L L +  V+ S++      
Sbjct: 231 KDVIDSSNNLCEYLHEHS---DPAY--AKNFSLITPTILSMLELNVSEVTASVYRLLRHL 285

Query: 671 TLGKTVFACCNCLACPW 621
            L  T F+CC  L  PW
Sbjct: 286 FLDATAFSCCQMLNLPW 302


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 402 TFSASAFPYFRIHFXFSAWPRPLSRHYXT 316
           ++SA    Y+R  F  S + RPL+ H+ T
Sbjct: 75  SYSAILISYYRCIFIISLFHRPLTIHFLT 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,589,422
Number of Sequences: 5004
Number of extensions: 61047
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)