Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N08
         (1236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    76   1e-14
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   4.1  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   9.4  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
 Frame = +3

Query: 51  IVXASXRRNAXSHSVLGTFLGTRAKG--VVXVTNCFCVPHKAHADQVEAELNYALDVYAL 224
           I+  S R++  +  V+GT LGTR++    + + +CF VPH   ++QVE E+ Y   +Y L
Sbjct: 33  ILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHL 92

Query: 225 NRSVNSSESIVGWWAPGNEVTNHSSVIHEYYSRECREP------------VHVTLDTSLA 368
           +   N  E +VGW+A   ++   S++I   Y+    EP            VH+T++T ++
Sbjct: 93  HLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVHLTVNTDVS 151

Query: 369 GGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTLTCYEPEIVGLQ 497
              + ++ YV  P+G+       C F P   T+   E    GL+
Sbjct: 152 -SPLAIKTYVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLK 194


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 88  TAFSAPSWARAPKAWWXSPTASACHTKHMPIKSKRNLIT 204
           TAF+ P  A    A + +P  S CH  +  +K   N ++
Sbjct: 112 TAFTGPMLANLYCALYPNPGYSLCHESYFELKQNENEVS 150


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 437 HVHSCRCHSHV 469
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,667
Number of Sequences: 5004
Number of extensions: 55622
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)