Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N08
         (1236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...   101   9e-22
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    42   8e-04
01_01_1072 + 8454342-8455022                                           30   4.3  
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    29   5.7  
11_01_0307 + 2304500-2306023                                           29   7.5  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    29   10.0 
07_03_0820 - 21749477-21749866,21751192-21751590                       29   10.0 

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score =  101 bits (243), Expect = 9e-22
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
 Frame = +3

Query: 69  RRNAXSHSVLGTFLGT-RAKGVVXVTNCFCVPHKAHADQVEAELNYALDVYALNRSVNSS 245
           RR   +  V+GT LG+    G V V N + VPH    DQV  ++ Y  ++YA +  VN  
Sbjct: 35  RRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPK 94

Query: 246 ESIVGWWAPGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNG 425
           E IVGW++ G  V+  S++IH++YSRE + P+H+T+DT    G   ++AY+   L + + 
Sbjct: 95  EVIVGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDR 154

Query: 426 KQGCMFTPVDVTLTCYEPEIVGLQVCQKT 512
                F  + + L   E   VG  + + T
Sbjct: 155 HLAAQFQEIPLDLRMLEAGKVGFDILKST 183


>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 42.3 bits (95), Expect = 8e-04
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 93  VLGTFLGTRAKGVVXVTNCFCVPHKAHADQVEAE-LNYALDVYALNRSVNSSESIVGWW 266
           V G  LG     V+ VTNCF  P +   ++ +A+  NY L++    R VN   + VGW+
Sbjct: 57  VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWY 115


>01_01_1072 + 8454342-8455022
          Length = 226

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 22/83 (26%), Positives = 29/83 (34%)
 Frame = +1

Query: 25  SSXPGFLXQLWXHPHVEMXLLTAFSAPSWARAPKAWWXSPTASACHTKHMPIKSKRNLIT 204
           S  PGF         V   L+TA +       P  +W    A   H    PI   +N   
Sbjct: 58  SHAPGFEANKNDTLLVVATLITALTYQLGTNVPGGYWQDDAADGSHAAGDPIMRDKNRRR 117

Query: 205 RWMFTR*TEASIPLKVLLVGGRL 273
            W+F   + A     +LL  G L
Sbjct: 118 YWLFMAASWAGFGSSMLLTLGLL 140


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 93  VLGTFLGTRAKGVVXVTNCFCVP 161
           V+G  LGT ++G V VTN + VP
Sbjct: 42  VVGVLLGTSSRGSVDVTNSYAVP 64


>11_01_0307 + 2304500-2306023
          Length = 507

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 290 VGYFIARRPPTNNTFRGIDASVQRV 216
           VGYF  RRPP ++T RG+    + V
Sbjct: 423 VGYFKVRRPPRSSTRRGMSPGAKAV 447


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 433 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 335
           P  PF +P  +  +AR P  P  +E+S    TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631


>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 667 AAPSCSSHIPHLTLPRTPSQMPSPP 741
           ++PS SS   H  LPR P+  P PP
Sbjct: 25  SSPSSSSSSTHSLLPRPPALWPPPP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,462,435
Number of Sequences: 37544
Number of extensions: 428826
Number of successful extensions: 1131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)