Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N08
         (1236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    81   2e-15
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical ...    29   6.8  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 80.6 bits (190), Expect = 2e-15
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
 Frame = +3

Query: 63  SXRRNAXSHSVLGTFLGTRAKGVVXVTNCFCVPHKAHADQVEAELNYALDVYALNRSVNS 242
           S  +N      +GT +G   KG + VTNCF +P     D +E +  +   + +  +  + 
Sbjct: 27  SSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSP 86

Query: 243 SESIVGWWAPGNEVTNHSSVIHEYYSRECRE--------PVHV-TLDTSLAGG---RMGL 386
           +E  VGW+   +++T+   + H+YY R   E        P+ V T+DT+ +G    RM +
Sbjct: 87  NEQPVGWFLTTSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPV 146

Query: 387 RAYVCVPLGVPN--GKQGCMFTPVDVTLTCYEPEIVGLQVCQK 509
           RAY+    G+P   G    +F P+ V L  +  E+V +Q+ +K
Sbjct: 147 RAYLRSKAGIPGAAGPHCAIFNPLRVELAAFPGELVAMQLIEK 189


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 TASACHTKHMPIKSKRNLITRWMFT 219
           T  ACHT  M +  K+N IT W ++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYS 79


>AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical
           protein E01A2.5 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 233 ASVQRVNIQRVIKFRFDLIGMCFVWHAEAVG 141
           +S Q+V ++ + + R DL+ +CF+W  E  G
Sbjct: 119 SSYQKVRVEDICR-RLDLVPLCFLWEREQNG 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,588
Number of Sequences: 27780
Number of extensions: 339713
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)