Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N07
         (1257 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 VGXPTKGLKHQLSQEXPGESVEVKRKN 389
           +G P +  K++L +   G+   VKRK+
Sbjct: 426 LGFPPRSKKNKLKKPRQGDGAAVKRKS 452


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 525 DENEKLRKTIEELKEENASLKQMLEEANSFVEIIKEELANDSNNDTGIDVNDV 683
           D    L+    E K +N   KQ   ++   +EI  +    +  N    D+NDV
Sbjct: 26  DTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKELANSAKRDINDV 78


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 511 YKML*MKMRNYEKLLKN*RRKMH 579
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 511 YKML*MKMRNYEKLLKN*RRKMH 579
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,907
Number of Sequences: 438
Number of extensions: 4930
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)