Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N06
         (1237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0217 + 15814303-15814905                                         34   0.20 
08_01_0534 - 4635122-4635380,4635716-4635837                           32   0.81 
11_06_0480 - 24081075-24081723,24083427-24084202                       29   10.0 
05_06_0278 + 26894802-26895362                                         29   10.0 

>12_02_0217 + 15814303-15814905
          Length = 200

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 42  SGSAAGLCQGXRVQRDRPNMWLGSRGPGATAG 137
           +  AAG CQ  R +R    +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197


>08_01_0534 - 4635122-4635380,4635716-4635837
          Length = 126

 Score = 32.3 bits (70), Expect = 0.81
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 44  GQRSGTVPGXPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTGRATDVTR 193
           GQR G  P    +  R  Q V    +GV W  C GR    +++G WTG A + TR
Sbjct: 46  GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 165 QRPSDVAGRRRPSHRAHATPATCWGGRVARGXPGTVP 55
           +RP  ++ RR  S  + + PA+C GGRV      +VP
Sbjct: 62  RRPHLLSLRRPSSSSSSSVPASCGGGRVDGDLTASVP 98


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +2

Query: 50  RSGTVPGXPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLDDSRP 211
           RSG  P  P++ RP   +AGV      GR    T      G +T     DD +P
Sbjct: 75  RSGGAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGSTKPLSDDDGKP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,923
Number of Sequences: 37544
Number of extensions: 363274
Number of successful extensions: 991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)