Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N04
(1228 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0110 + 20910084-20910187,20910255-20910303,20911334-209114... 56 4e-08
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 53 4e-07
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 52 1e-06
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 33 0.35
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 31 1.9
05_01_0126 + 858259-858489,858641-859189,859545-860162 31 2.4
08_02_0254 - 14879724-14880635 29 5.7
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 29 5.7
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 5.7
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 29 7.5
>03_05_0110 +
20910084-20910187,20910255-20910303,20911334-20911442,
20911597-20911690,20912253-20912386,20912519-20912682,
20912818-20912889
Length = 241
Score = 56.4 bits (130), Expect = 4e-08
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Frame = +3
Query: 387 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCA- 563
NL +++P D W + F ++N L L C PE+C MTA ++ + A
Sbjct: 67 NLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLAEFCTPESCPTMTAGPKYEYRWAD 126
Query: 564 --AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAK--LGSVCRRVYRIF 731
K P E A Y + +D L+ FP ++ K + ++ +R++R++
Sbjct: 127 GVQIKKPIEVSAPKYVEYLMDWIEGQLDDESIFPQKLGTPFPPNFKEVVKTIFKRLFRVY 186
Query: 732 SHAYFHHRSIYDAFERETHL--C-KRFTYFVTKYPIIPQEIL 848
+H Y H + + E HL C K F F T++ +I ++ L
Sbjct: 187 AHIYHSHFQKIVSLKEEAHLNTCFKHFILFTTEFGLIDKKEL 228
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 53.2 bits (122), Expect = 4e-07
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 8/168 (4%)
Frame = +3
Query: 387 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAA 566
NL +++P D W + F ++N L L C P TC M+A ++ + A
Sbjct: 858 NLRDAVRLPPGEDLNEWLAVNTVDFFNQVNILYGTLMEFCTPTTCPTMSAGPKFEYRWAD 917
Query: 567 H---KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVN--IKDSSIAKLGSVCRRVYRIF 731
K P E A Y + +D L+ FP ++ + + ++ +R++R++
Sbjct: 918 GIQIKKPIEVSAPKYVEYLMDWIEVQLDDESIFPQKLGTPFPQNFREVVKTIFKRLFRVY 977
Query: 732 SHAYFHHRSIYDAFERETHL--C-KRFTYFVTKYPIIPQEILILPKLD 866
+H Y H + + E HL C K FT F ++ +I + L P +D
Sbjct: 978 AHIYHTHFQKIVSLKEEAHLNTCFKHFTLFTWEFKLIDKAEL-APLID 1024
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 51.6 bits (118), Expect = 1e-06
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Frame = +3
Query: 387 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAA 566
NL +++P D W + F ++N L L C TC M+A ++ + A
Sbjct: 41 NLREAVRLPIGEDLNEWLAVNTVDFFNQVNFLYGTLMEFCTSSTCPIMSAGPKYEYRWAD 100
Query: 567 H---KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVN--IKDSSIAKLGSVCRRVYRIF 731
K P + A Y + +D L+ FP ++ + + ++ +R++R++
Sbjct: 101 GMKVKKPVQVSAPKYVEYLMDWVESQLDDEAIFPQKIGAPFPQNFREVIRTIFKRLFRVY 160
Query: 732 SHAYFHHRSIYDAFERETHLCKRFTYFV 815
SH Y H + + E HL F +FV
Sbjct: 161 SHMYHSHFQMILKLKEEAHLSTCFKHFV 188
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 33.5 bits (73), Expect = 0.35
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 293 VLGFGAGSIASEYLNSVGHFFWWNGEKILLFVYTGSNV 180
+ GFG GS+ S G FW+ G+ I+ YTG +
Sbjct: 273 ITGFGMGSVMCVVFGSYGLAFWYGGKLIIEKGYTGGKI 310
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +3
Query: 735 HAYFHHRSIYDAFERETH----LCKRFTYFV 815
HAY HHR IY+AF H +C R +F+
Sbjct: 682 HAYGHHRLIYEAFNSYHHCEIIICMRIHFFM 712
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 679 IHQLPSWDLFVEGFTGSSHMHTFIIVQFMMH 771
+ QLP W +F TGS H F VQ ++H
Sbjct: 371 VPQLPRWQIFYARRTGSEVYHAFFRVQDVIH 401
>08_02_0254 - 14879724-14880635
Length = 303
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/55 (25%), Positives = 20/55 (36%)
Frame = +3
Query: 435 WKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAAHKTPKECPAID 599
W Y++L QFC + +N C E ++ W C P ID
Sbjct: 224 WLYDNLNQFCGAATE-GIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMSEVID 277
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 276 GTKAKDFCRWPDEPFEEMDSTLAVQQFIQQTIRRDPSNLEAILKMPEV 419
G +A D RWP P+ + T + +Q R P +E + MP +
Sbjct: 341 GVQASDPVRWPQSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPNL 388
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 287 GFGAGSIASEYLNSVGHFFWWNGEKILLFVYTGSNV 180
GFG GS+ + +S G W+ G+ ++ Y+G ++
Sbjct: 280 GFGMGSVFFIFFSSYGLAIWYGGKLVVSKGYSGGDI 315
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 29.1 bits (62), Expect = 7.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +3
Query: 576 PKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRRVYRIFSHAYFHHR 755
P A D LDG+ +L + ++ SI +G +C ++F+ + R
Sbjct: 297 PTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI--VGKICAEAEKVFNQDLYFKR 354
Query: 756 SIYDAFERETHL 791
++ E THL
Sbjct: 355 TVKHVGEPMTHL 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,250,857
Number of Sequences: 37544
Number of extensions: 567216
Number of successful extensions: 1328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -