Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N03
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    30   0.59 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    29   1.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    29   1.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   4.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   4.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   7.2  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   9.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   9.5  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    26   9.5  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 464 YHHKNVNIAFMWVPSHRGITGNEKADKAAREAINSIDVTDSLLVPFTD 321
           YHHK+ N  +M+VP+H G+  N + +      +N   V   L+ PFT+
Sbjct: 372 YHHKDGNNEWMFVPTH-GVAYNYEENDPMNPILNGSVV--RLIHPFTN 416


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 509 KTNYVLYIIKELLYKYHHKNVN 444
           K   +  ++K LL++YHH+NVN
Sbjct: 221 KGRQIQSLMKSLLFEYHHENVN 242


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 246  ESGMEVYKITCLLXPWYDKLKTSESRDFITTINRLR 139
            E GM+V K    L  W++ +++S+   F+    R+R
Sbjct: 2311 ELGMQVAKNLIFLTRWFNSIRSSDDSPFLEIFRRMR 2346


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 21  ESXRFQCDGSSLLLLDSVYIGYLKQCQVLLGVTAQYYGQISICLLL**NLDFH*FS 188
           E    + DGSS  LLDS+    L    VL+     Y G  ++   L   LDF  FS
Sbjct: 160 EGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMSFS 215


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 434 MWVPSHRGITGNEKADKAAREAINSIDVTDSLLVPFTD 321
           +W    RG+ GNE+A     + ++ +D   + LV  TD
Sbjct: 280 LWDQEDRGMLGNEQAASMEEDEVDPLDAYMASLVGTTD 317


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 134 PNLNLFIVVMKSRLSLVFNLSYHGFN 211
           PN NLF+  +   +SL+ N  Y GFN
Sbjct: 837 PNSNLFVQQLGYIVSLIENNDYAGFN 862


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 984 DIPLLHYYLE*PFLTNIHPRCP*YIW 907
           +I ++H+YLE PFL  I      ++W
Sbjct: 305 NIDIVHFYLETPFLAGIFSSIFFWVW 330


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 389 DKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWTELWKKDQEXQGK 243
           D  A E INS  +    L       L +KE ++ +W  L ++ Q    K
Sbjct: 456 DSDAAELINSSKIQPCNLADHPQMTLQLKERLFLIWGNLEERIQHHISK 504


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 597 NSQ*GLINSISLCSKNGTRFIQNKALRKPSL*IIKCCMH 713
           N + G + +  LC+  G+    N ALR+P+L   KC  H
Sbjct: 23  NGERGNVPTSVLCNVEGSLLNSNPALRQPNL---KCIKH 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,424,548
Number of Sequences: 5004
Number of extensions: 86438
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)