Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N03
         (1261 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR541820-1|CAG46619.1|  286|Homo sapiens RNASEH1 protein.              35   0.72 
BT019670-1|AAV38476.1|  286|Homo sapiens ribonuclease H1 protein.      35   0.72 
BC002973-1|AAH02973.1|  286|Homo sapiens ribonuclease H1 protein.      35   0.72 
AJ224117-1|CAA11835.1|  286|Homo sapiens RNase HII protein.            35   0.72 
AF048995-1|AAC78564.1|  286|Homo sapiens ribonuclease H1 protein.      35   0.72 
AF048994-1|AAC78563.1|  286|Homo sapiens ribonuclease H1 protein.      35   0.72 
AF039652-1|AAC09261.1|  286|Homo sapiens ribonuclease H type II ...    35   0.72 
AC108488-1|AAX82026.1|  286|Homo sapiens unknown protein.              35   0.72 

>CR541820-1|CAG46619.1|  286|Homo sapiens RNASEH1 protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>BT019670-1|AAV38476.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>BC002973-1|AAH02973.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AJ224117-1|CAA11835.1|  286|Homo sapiens RNase HII protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF048995-1|AAC78564.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF048994-1|AAC78563.1|  286|Homo sapiens ribonuclease H1 protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AF039652-1|AAC09261.1|  286|Homo sapiens ribonuclease H type II
           protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


>AC108488-1|AAX82026.1|  286|Homo sapiens unknown protein.
          Length = 286

 Score = 34.7 bits (76), Expect = 0.72
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + ++I +M VP H G  GNE+AD+ ARE
Sbjct: 252 QGMDIQWMHVPGHSGFIGNEEADRLARE 279


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,134,020
Number of Sequences: 237096
Number of extensions: 3052233
Number of successful extensions: 11412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11412
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18000117210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)