Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N03
         (1261 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       56   8e-08
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    42   0.002
AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p pro...    37   0.067
AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,...    37   0.067
AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,...    37   0.067
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    36   0.088

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 56.4 bits (130), Expect = 8e-08
 Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = -3

Query: 746  IYTDGSKGNNYVHAAFYDSKARFSQSFVLNESCSIFTAEAYAVYQALLRITVVNSCTNFX 567
            IYTDGSK       A  DS  +      L    SIFTAEA+A+ +A  +    N+  +  
Sbjct: 965  IYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKAC-QFASKNAGKSVI 1023

Query: 566  XXXXXXXXXXXXXXXSVNYKTNYVLYIIKELLYKYHHKNVNIAFMWVPSHRGITGNEKAD 387
                             +  T  V +I+       H K + +  +WVPSH+GI GNE AD
Sbjct: 1024 CTDSLSSLSAIRNWNHNDPTTQEVRHILSS-----HPKKITL--LWVPSHQGIHGNELAD 1076

Query: 386  KAAREAINSIDVTDSLL-VPFTDYFLNIKENIY 291
            KAA+E    + +T S+L  PF    L  +  +Y
Sbjct: 1077 KAAQE----MRLTPSILFTPFNSKDLKSRIKLY 1105


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 42/157 (26%), Positives = 74/157 (47%)
 Frame = -3

Query: 758  TYYTIYTDGSKGNNYVHAAFYDSKARFSQSFVLNESCSIFTAEAYAVYQALLRITVVNSC 579
            T+  I+TDGSK  NY  +    ++    +  +L    S+ T+E  A+ +A+  +T  N  
Sbjct: 947  THNFIFTDGSK-INYTISFAITTETDVLKYGILPPYSSVLTSETIAILEAI-ELTK-NRR 1003

Query: 578  TNFXXXXXXXXXXXXXXXXSVNYKTNYVLYIIKELLYKYHHKNVNIAFMWVPSHRGITGN 399
              F                + N   ++    I+ L+ ++  K   I  MW+P H GI GN
Sbjct: 1004 GKFIICSDSLSAVDSIQNTNNN---SFYPSRIRSLITQHAPK---IKIMWIPGHSGIKGN 1057

Query: 398  EKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYT 288
            E AD+AA+ A +S+ +  +  +  TD   ++K ++ T
Sbjct: 1058 ELADQAAKSA-SSMPLILTPNINTTDIKKHLKADLAT 1093


>AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p
           protein.
          Length = 333

 Score = 36.7 bits (81), Expect = 0.067
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 482 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 372
           KEL       N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 323


>AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,
           isoform A protein.
          Length = 333

 Score = 36.7 bits (81), Expect = 0.067
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 482 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 372
           KEL       N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 323


>AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,
           isoform B protein.
          Length = 314

 Score = 36.7 bits (81), Expect = 0.067
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 482 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 372
           KEL       N+ + + +V +H+GI GNE ADK AR+
Sbjct: 268 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 304


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 36.3 bits (80), Expect = 0.088
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 482 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 372
           KEL       N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQDNNITVKWNYVEAHKGIEGNEMADKLARQ 323


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,286,845
Number of Sequences: 53049
Number of extensions: 895755
Number of successful extensions: 1281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6763870860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)