Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N03
         (1261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein...    32   0.75 
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    32   0.98 
AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical...    29   5.3  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   6.9  

>U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein
           1.0, isoform c protein.
          Length = 251

 Score = 32.3 bits (70), Expect = 0.75
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 455 KNVNIAFMWVPSHRGITGNEKADKAARE 372
           + + + F+ V  H GI GNEKAD+ AR+
Sbjct: 215 QKLKVKFLHVRGHAGIDGNEKADELARK 242


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 31.9 bits (69), Expect = 0.98
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 225 KITCLLXPWYDKLKTSESRDFITTINRLRFGHNT-APSHLARLGIVSNSQCIHCQAEEGT 49
           KI     P   K +    R+  T + RLR GH+    S++AR+   S S C  C + EG 
Sbjct: 268 KILGTAAPKICKSEEELPRETRTELARLRCGHSRLCGSYVARIENRSISPCRKCGSVEGD 327

Query: 48  IHHI 37
           ++H+
Sbjct: 328 VNHL 331


>AF098995-12|AAC67485.1|  406|Caenorhabditis elegans Hypothetical
           protein F58E1.12 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -3

Query: 392 ADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWTELWKKDQEXQGKV 240
           ADK      +++ + +  L  + DY++N ++ + T WT  ++ DQE + +V
Sbjct: 301 ADKRNIRFTSALGIMEEYLGLYLDYWVNNRKEVGTCWT--FELDQESEARV 349


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 147 RLRFGHNT-APSHLARLGIVSNSQCIHCQAEEGTIHHI 37
           RLR GH+     + ARL      +C++C  EEG + H+
Sbjct: 856 RLRCGHSLLVEKYKARLEERQIKKCLNCGDEEGDVQHL 893


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,139,211
Number of Sequences: 27780
Number of extensions: 475277
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)