Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N02
         (1172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    32   0.90 
AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    31   1.6  

>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +3

Query: 111 ICLPLSACNXSVCQSXVXLAT------CLSFVTAXRPKL*KKICLIT 233
           I  PL  CN +VC+  V  +T       LSF+T   P   KKI L+T
Sbjct: 146 ISKPLKLCNPNVCEIKVYFSTHIIMEPILSFMTCLNPSQLKKIILLT 192


>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 540 LHKFGNTCMKT*DSIMLLLKYIWRNKNLLKYIFSTFYY 427
           +H  GN   K   +++++L YI+   NL++++F   Y+
Sbjct: 86  IHLIGNRISKKQSTLLIILSYIFPVYNLVRFLFKASYF 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,600
Number of Sequences: 27780
Number of extensions: 293799
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)