Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_N01
(1237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 433 e-122
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 427 e-120
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 378 e-106
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 357 2e-99
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 296 5e-81
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 174 2e-44
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 129 7e-31
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 82 1e-16
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 33 0.11
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 30 0.76
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 27 5.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 5.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 7.1
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 7.1
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 27 7.1
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 9.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 433 bits (1067), Expect = e-122
Identities = 204/248 (82%), Positives = 227/248 (91%)
Frame = +3
Query: 165 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNN 344
+IGIDLGTTYSCVG + + VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 345 TVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 524
T+FDAKRLIGRKFDDP++Q DMKHWPFKVI+ GKP +Q+E+KGETK F PEEISSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 525 KMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL 704
KM+ETAEAYLG V DAVVTVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAA+AYGL
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 705 DKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEE 884
D++ +GE NVLIFDLGGGTFDVS+LTI+EG +FEVK+TAGDTHLGGEDFD+RLVNH +E
Sbjct: 184 DRSNQGESNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDSRLVNHFIQE 242
Query: 885 FKRKYKKD 908
FKRK KKD
Sbjct: 243 FKRKNKKD 250
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 427 bits (1052), Expect = e-120
Identities = 202/248 (81%), Positives = 226/248 (91%)
Frame = +3
Query: 165 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNN 344
+IGIDLGTTYSCVG + + VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 345 TVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 524
T+FDAKRLIGR+F+DP++Q DMKHWPFKVI GKP IQ+EFKGETK F PEEISSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 525 KMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL 704
KM+E+AEA+LG V DAVVTVPAYFNDSQRQATKDAG IAGLNVLRIINEPTAAA+AYGL
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 705 DKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEE 884
D++ + E NVLIFDLGGGTFDVS+LTI+EG +FEVK+TAGDTHLGGEDFD+RLVNH A+E
Sbjct: 184 DRSNQHETNVLIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDSRLVNHFAQE 242
Query: 885 FKRKYKKD 908
FKRK KKD
Sbjct: 243 FKRKNKKD 250
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 378 bits (930), Expect = e-106
Identities = 179/248 (72%), Positives = 208/248 (83%)
Frame = +3
Query: 165 AIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNN 344
AIGIDLGTTYSCV VW+ NVEII NDQG RTTPS+VAFT+TERL+GDAAKNQ A+NP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 345 TVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 524
TVFDAKRLIGR+++DP+ Q+D+KHWPFKVI++ G P I++ + GE K+F +EIS+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 525 KMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL 704
KMKE +EA L V AV+TVPAYF+DSQR ATKDAGAIAGLNVLRIINEPTAAA+AYGL
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGL 187
Query: 705 DKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEE 884
D +NVLIFDLGGGTFDVS+L I +G +FEV +TAGDTHLGGEDFDN LV H +E
Sbjct: 188 DAKSDKPKNVLIFDLGGGTFDVSLLKI-QGGVFEVLATAGDTHLGGEDFDNALVEHFIQE 246
Query: 885 FKRKYKKD 908
FKRK K D
Sbjct: 247 FKRKQKID 254
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 357 bits (878), Expect = 2e-99
Identities = 164/247 (66%), Positives = 206/247 (83%)
Frame = +3
Query: 168 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNT 347
IGIDLGTTYSCV V ++G VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 348 VFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTK 527
+FD KRLIGRKFD+ + +D+K +PF ++ND +P +++ G+ K+F PEEIS+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 528 MKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLD 707
MK+TAEAYLG V AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AYGLD
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLD 217
Query: 708 KNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHLAEEF 887
K E++++++DLGGGTFDVS+L+ID G +FEV +T+GDTHLGGEDFDNR++N+LA +
Sbjct: 218 KT-DTEKHIVVYDLGGGTFDVSLLSIDNG-VFEVLATSGDTHLGGEDFDNRVINYLARTY 275
Query: 888 KRKYKKD 908
RK D
Sbjct: 276 NRKNNVD 282
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 296 bits (726), Expect = 5e-81
Identities = 146/247 (59%), Positives = 186/247 (75%), Gaps = 1/247 (0%)
Frame = +3
Query: 156 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAL 332
K P IGIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 333 NPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISS 512
NP NT F KRLIGR+F +P++Q+D+K P+K++ +E +G+T ++P +I
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEH-SNGDAWLEARGKT--YSPSQIGG 165
Query: 513 MVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAL 692
+L+KM+ETA YLG V++AVVTVPAYFNDSQRQATK AGAIAGLNVLR++NEPTAAAL
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAAL 225
Query: 693 AYGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNH 872
AYGLDK K + V +FDLGGGTFD+SIL ++ G +FEV+ST GDTHLGGEDFD LV H
Sbjct: 226 AYGLDK--KNDAIVAVFDLGGGTFDISILELNNG-VFEVRSTNGDTHLGGEDFDVALVRH 282
Query: 873 LAEEFKR 893
+ E FK+
Sbjct: 283 IVETFKK 289
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 174 bits (424), Expect = 2e-44
Identities = 95/252 (37%), Positives = 147/252 (58%), Gaps = 5/252 (1%)
Frame = +3
Query: 168 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNT 347
+GID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A N NT
Sbjct: 8 VGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNT 67
Query: 348 VFDAKRLIGRKFDDPKIQQDMKHW-PFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLT 524
V KRL GR +DDP+I+ ++ K+ G ++++ E F+ ++ + T
Sbjct: 68 VGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFT 127
Query: 525 KMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL 704
K+K AEA L +V D V+++PA+F D QR+A +A IAGLN LR++N+ AAAL YG+
Sbjct: 128 KIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGI 187
Query: 705 DK----NLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNH 872
K + R V I D G + VSI+ G F +KST D +LG + D L+++
Sbjct: 188 TKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQ-FHIKSTVCDRNLGSRNMDKALIDY 246
Query: 873 LAEEFKRKYKKD 908
A EFK KYK D
Sbjct: 247 FAAEFKEKYKID 258
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 129 bits (312), Expect = 7e-31
Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 4/247 (1%)
Frame = +3
Query: 168 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNT 347
IGI G S + + G +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 348 VFDAKRLIGRKFDDPKIQQ-DMKHWPFKVINDCG-KPKIQIEFKGETKR--FAPEEISSM 515
V + + L+G+ D+ + P V G K +Q + + + K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEASVR 146
Query: 516 VLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALA 695
L ++ E+AE +LG+ V V++VP YF D+QR+A + A AGL VL++I++P A LA
Sbjct: 147 HLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILA 206
Query: 696 YGLDKNLKGERNVLIFDLGGGTFDVSILTIDEGSLFEVKSTAGDTHLGGEDFDNRLVNHL 875
+ + ++ V++ + G +VS++++ +G L + ++ D +LGGE + LVN
Sbjct: 207 LMYSEEVLIDKTVVVANFGATRSEVSVVSV-KGGLMTILASVHDENLGGEQLTDVLVNFF 265
Query: 876 AEEFKRK 896
A+EF++K
Sbjct: 266 AKEFEKK 272
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 82.2 bits (194), Expect = 1e-16
Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 15/267 (5%)
Frame = +3
Query: 153 FKMPAIGIDLGTTYSCVGVWQHG-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 329
F + ID GT ++ + + G +EI+ R S VAF ER+ G A N
Sbjct: 20 FASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLAT 79
Query: 330 LNPNNTVFDAKRLIGRK-FDDPKIQQDMKHWPFKVINDCGKPKIQIEFK-GETKRFAPEE 503
P +++ + K L+ + +Q+ +P + + + I F + + ++ EE
Sbjct: 80 RFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEE 139
Query: 504 ISSMVLTKMKETAEAYLGSTVRDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTA 683
I +M + AE + D V+TVP +FN+ QR +A I +VL +I++ A
Sbjct: 140 IIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVA 199
Query: 684 AALAYGLDKNLKGERNV-LIFDLGGGTFDVSILTID--EGSLFEVKS--------TAGDT 830
A+ Y L ++ + +I+D G G+ ++++ D EGS K +G T
Sbjct: 200 VAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEGSSLGKKQNITRIRALASGFT 259
Query: 831 -HLGGEDFDNRLVNHLAEEFKRKYKKD 908
L G + + +L+ + F +K+ D
Sbjct: 260 LKLSGNEINRKLIGFMKNSFYQKHGID 286
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 273 VAFTDTERLIGDAAKNQVALNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVIND-CGK 449
+ F+D E GD A L P + AK L+G+ D I D P++V+ D G
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 450 PKIQIE 467
K+ I+
Sbjct: 185 LKLMID 190
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 29.9 bits (64), Expect = 0.76
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 378 KFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKR 488
K D ++ +D+++ N+CGKP +++ G+ K+
Sbjct: 280 KVDGSELYEDIRNQRVSYCNECGKPPLKLRRVGQNKK 316
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 636 AIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVS 773
A AGL + +I+N T A YG N+ G +V++++ T +S
Sbjct: 388 AAAGLPLFQILNGTTVIAQGYG-PLNILGNNSVVLYNFNFCTTRIS 432
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 630 AGAIAGLNVLRIINEPTAAALAYGLDKNLKGE 725
A AI +NV R+ N A L G+D N+K +
Sbjct: 1049 ADAIVPVNVRRVTNRFVAVKLDCGIDGNIKAD 1080
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -1
Query: 454 FGLPQSLITLK---GQCFMSC*ILGSSN---FLPISLFASNTVLLGFKATWFLA 311
F +PQ + +K + F ILG+S +LP+++F + ++LGF +F A
Sbjct: 504 FWIPQIIQNVKQGTSRSFTWTYILGASVLRLYLPLAIFIDSELILGFPPKYFFA 557
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 881 FRKMVD*SVIKVFASQVRVAGCGLHFEQRSLVDSQDG 771
F +++ SV + S + +A C +FE+RSL Q G
Sbjct: 173 FNRIMTPSVNSQYISTIGLAKCEEYFEERSLASLQRG 209
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 15 IGNPLRSQNFXQRNTKQTKRLQCXLKTSFSTSYLLF 122
+GN L + +NT Q RL L T+FS +L +
Sbjct: 57 LGNVLWGVSVWTKNTSQVDRLWPILPTAFSLHFLFY 92
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 9.4
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = -1
Query: 805 SNNDPSSIVRMDT-SKVPPPR--------SKIRTFLSPLRFLSRPY---ASAAAVGSLMM 662
+N + S+I+R T S VPPP+ +K L+P ++ P + + SL+
Sbjct: 451 NNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAPWTLVNAPLITNLTHETITSLLD 510
Query: 661 RSTFRPAMAPASLVA*RWESLKY 593
+ F +P +L+A W S+ Y
Sbjct: 511 QEAFFHGNSPCALLANFWGSVNY 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,350
Number of Sequences: 5004
Number of extensions: 74840
Number of successful extensions: 274
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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