Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_N01
         (1237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 387 DPKIQQDMKHWPF 425
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 613 RWESLKYAGTVTTASRTVLP 554
           +W+S+  +GT T  +RT+ P
Sbjct: 448 QWKSILESGTTTLQTRTMHP 467


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 609 QRQATKDAGAIAGLNVLRIINEPTAAALAYG 701
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 857 PTSQPSCGRVQAQVQEGSXPELSRTPXPPXG 949
           P  QPS  +     Q GS P  S+ P PP G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP-PPGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,794
Number of Sequences: 438
Number of extensions: 5980
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42142113
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)