Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M24
         (1416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    35   0.024
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    28   3.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 35.1 bits (77), Expect = 0.024
 Identities = 29/106 (27%), Positives = 33/106 (31%)
 Frame = +2

Query: 749  APXPVRVRXGXXVPGXGGXXRAPRXAXXSXRPXPXXKXXXGXXXXPXLXXAXPPXXGPGG 928
            AP PV       +P       AP     S  P P  K        P    A PP   P G
Sbjct: 1062 APPPVPA-PSSEIPSIPAPSGAPPVPAPSGIP-PVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 929  XXVLPXRAGXXXGVPPPXGXPPXRVPGXPGXXXSXPGXXGPLXPXP 1066
               +P  +     VP P G PP   P         P    P+ P P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV-PKP 1164



 Score = 32.3 bits (70), Expect = 0.17
 Identities = 20/73 (27%), Positives = 22/73 (30%)
 Frame = +2

Query: 848  PXXKXXXGXXXXPXLXXAXPPXXGPGGXXVLPXRAGXXXGVPPPXGXPPXRVPGXPGXXX 1027
            P      G    P    A PP   P G   +P  +     VP P G PP   P       
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171

Query: 1028 SXPGXXGPLXPXP 1066
              P    P  P P
Sbjct: 1172 PAPSSGIPPVPKP 1184



 Score = 31.5 bits (68), Expect = 0.29
 Identities = 27/108 (25%), Positives = 29/108 (26%)
 Frame = +2

Query: 743  GDAPXPVRVRXGXXVPGXGGXXRAPRXAXXSXRPXPXXKXXXGXXXXPXLXXAXPPXXGP 922
            G  P P        VP   G   AP     S    P      G    P      PP   P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSG---APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194

Query: 923  GGXXVLPXRAGXXXGVPPPXGXPPXRVPGXPGXXXSXPGXXGPLXPXP 1066
                 +P  +     VPPP   PP   P         P    P  P P
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 26/95 (27%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
 Frame = +2

Query: 785  VPGXGGXXRAPRXAXXSXRPXPXXKXXXGXXXXPXLXXAXPPXXGPGGXXVLPXRAGXXX 964
            VP   G    P+ +  +  P P      G    P    A PP   P G   +P  +    
Sbjct: 1114 VPAPSGAPPVPKPSVAAP-PVPVPS---GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169

Query: 965  GVP-PPXGXPPXRVPGXPGXXXSXPGXXGPLXPXP 1066
             VP P  G PP   P   G     P    P  P P
Sbjct: 1170 PVPAPSSGIPPVPKPA-AGVPPVPPPSEAPPVPKP 1203


>SPAC57A7.04c |pabp||mRNA export shuttling protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
 Frame = +2

Query: 977  PXGXP-PXRVPGXPGXXXSXPGXXGPLXPXPXXRXXTXXXGXXPGXPXXRXRXXXPPPGL 1153
            P G P P  V G        PG  GP+   P         G  PG P    R   P  G 
Sbjct: 486  PGGYPIPAAVNGR--GMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGR 543

Query: 1154 PXXXXRGSGDXXGP 1195
            P     GS    GP
Sbjct: 544  PMMMP-GSVPSAGP 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,045
Number of Sequences: 5004
Number of extensions: 21371
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 786922488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)