Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M24
(1416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 35 0.18
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 34 0.24
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.41
07_01_0479 + 3606663-3607448 31 1.7
05_04_0300 - 19969066-19969535,19971216-19972686 30 3.8
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 30 3.8
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 29 6.7
05_01_0142 - 940421-940701,941262-941574 29 8.9
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.9
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 34.7 bits (76), Expect = 0.18
Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Frame = -3
Query: 1048 PPXXRXGXXXXRGPXHXPXGXSXXGGXPXAXPGPXRENXXAPXAPGGG------XRPXQX 887
PP G P G GG P PG P APGGG R
Sbjct: 91 PPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGG 150
Query: 886 GXGXXXVXXFPXGXRAXGXXXXPGG 812
G G + P G R PGG
Sbjct: 151 GGGGGALARPPGGGRGGALGRPPGG 175
Score = 32.3 bits (70), Expect = 0.95
Identities = 26/90 (28%), Positives = 26/90 (28%)
Frame = -3
Query: 1147 GGGXXTPXPXXGGARPXXXXGXXXXXSRXGXKGPPXXRXGXXXXRGPXHXPXGXSXXGGX 968
GGG P P GG G G G R G P G GG
Sbjct: 127 GGGARPPAPGGGGG-----GGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGG 181
Query: 967 PXAXPGPXRENXXAPXAPGGGXRPXQXGXG 878
P PG APGGG G G
Sbjct: 182 PGRAPGGGGGGGGPGRAPGGGGGGGGLGGG 211
Score = 31.9 bits (69), Expect = 1.3
Identities = 30/110 (27%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Frame = -3
Query: 1123 PXXGGARPXXXXGXXXXXSRXGXKGPPXXRXGXXXXRGPXHXPXGXSXXGGXPXAXPGPX 944
P GGA G G GPP G G G GG P G
Sbjct: 92 PGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGG 151
Query: 943 RENXXAPXAPGGG-----XRPXQXGXGXXXVXXFP-XGXRAXGXXXXPGG 812
PGGG RP G G P G G PGG
Sbjct: 152 GGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGG 201
Score = 31.1 bits (67), Expect = 2.2
Identities = 32/117 (27%), Positives = 32/117 (27%)
Frame = -1
Query: 1320 APGPAXXCXXXPRKXXXXXXXGDRVXXPXXGGGRLXSXXRXXGPXXSPEPRXXCXGXPGG 1141
APGP P G P GGG G PR G GG
Sbjct: 97 APGPLGGGGARP--PGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Query: 1140 GXXXRXLXXGXPGXXPXXXVXXRXXGXGKRGPXXPGXDXXXPGXPGTRXGGXPXGGG 970
G R G G G G GP G PG GG GGG
Sbjct: 155 GALARPPGGGRGGALGRPP----GGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGG 207
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 34.3 bits (75), Expect = 0.24
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Frame = +2
Query: 905 PPXXGPGGXXVLPXRAGXXXGVPPPXG-------XPPXRVPGXPGXXXSXPGXXGPLXP 1060
PP G GG P AG G PPP PP R G G + PG P P
Sbjct: 1152 PPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMP 1210
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/86 (27%), Positives = 25/86 (29%)
Frame = -1
Query: 978 GGGTPXXXPARXGRTXXPPGPXXGGXAXXNXGXXXXPXXXFXXGXGRXXXXAXRGARXXP 799
G G P P G T PP P GG G P G G G P
Sbjct: 1105 GAGAPPPPPPPGGITGVPPPPPIGGLG----GHQAPPAPPLPEGIGGVPPPPPVGGLGGP 1160
Query: 798 PXPGTXXPXRTRTGXGASPGSXXPKP 721
P P R T + G P P
Sbjct: 1161 PAPPPPAGFRGGTPPPNAHGGVAPPP 1186
Score = 31.5 bits (68), Expect = 1.7
Identities = 29/115 (25%), Positives = 30/115 (26%), Gaps = 3/115 (2%)
Frame = +3
Query: 810 GPPGXXXXPXARXPXGKXXTXXXPXPXWXGRXPPP---GAXGAXXFSLXGPGXAXGXPPX 980
G G P G P P G PPP G G G G PP
Sbjct: 1117 GITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
Query: 981 XXXPXGXCXGPLXXXXPXRXXGGPFXPXLXXXXXXPXXXXGRAPPXXGXGVXXPP 1145
G P G P P P G PP G G+ PP
Sbjct: 1177 NAH-GGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
Score = 29.5 bits (63), Expect = 6.7
Identities = 33/129 (25%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Frame = +2
Query: 884 PXLXXAXPPXXGPGGXXVLPXRAGXXXGVPPP-----XGXPPXRVPGXPGXXXSXPGXXG 1048
P L PP G G P G PPP G PP G G + P
Sbjct: 1082 PPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPL 1141
Query: 1049 P--LXPXPXXRXXTXXXGXXPGXPXXRXRXXXPPPGL------PXXXXRGSGDXXGPXXR 1204
P + P G P R PPP P RG G GP
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTP 1201
Query: 1205 XXXXSRPPP 1231
+ P P
Sbjct: 1202 PGAPAPPMP 1210
Score = 29.1 bits (62), Expect = 8.9
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 789 RAKGGTXGPPGXXXXPXARXPXGKXXTXXXPXPXWXGRXPPPGAXGAXXFSL 944
R GG GPP P P G P P G PPG G L
Sbjct: 1190 RGHGGVGGPPTPPGAPAPPMPPG-VPGGPPPPPGGRGLPAPPGGRGVVGHGL 1240
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.5 bits (73), Expect = 0.41
Identities = 28/102 (27%), Positives = 28/102 (27%)
Frame = +2
Query: 842 PXPXXKXXXGXXXXPXLXXAXPPXXGPGGXXVLPXRAGXXXGVPPPXGXPPXRVPGXPGX 1021
P P P A P P P AG G PPP PP P P
Sbjct: 307 PLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPP---PPPAAPAAP-- 361
Query: 1022 XXSXPGXXGPLXPXPXXRXXTXXXGXXPGXPXXRXRXXXPPP 1147
P GP P P G P R PPP
Sbjct: 362 ---RPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
Score = 33.1 bits (72), Expect = 0.54
Identities = 31/103 (30%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Frame = +2
Query: 938 LPXRAGXXXGV---PPPXGXP--PXRVPGXPGXXXSXPGXXGPLXPXPXXRXXTXXXGXX 1102
LP AG G PPP P P P P + G P P P G
Sbjct: 308 LPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPG 367
Query: 1103 PGXPXXRXRXXXPPPGLPXXXXRGSGDXXGPXXRXXXXSRPPP 1231
PG P PPPG RG G P +R PP
Sbjct: 368 PGPP--------PPPG---AAGRGGGGPPPPALPGGPRARGPP 399
Score = 32.3 bits (70), Expect = 0.95
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Frame = +2
Query: 971 PPPXGX-PPXRVPGXPGXXXSXPGXXGPLXPXPXXRXXTXXXGXXPGXPXXRXRXXXPPP 1147
PPP G PP P P P P P G P P PPP
Sbjct: 277 PPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPP 336
Query: 1148 G-LPXXXXRGSGDXXGPXXRXXXXSRPP 1228
P GSG P RPP
Sbjct: 337 APSPSAAGAGSGPPPPPPPAAPAAPRPP 364
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.5 bits (68), Expect = 1.7
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = -1
Query: 1065 GXGKRGPXXPGXDXXXPGXPGTRXGGXPXGGGTPXXXPARXGRTXXPPGPXXGG 904
G RGP G PG PG G G P P R G PPGP G
Sbjct: 206 GPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPP---PFRPGMPPPPPGPQQPG 256
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +2
Query: 968 VPPPXGXPPXRVPGXPGXXXSXPGXXGPLXPXPXXRXXTXXXGXXPGXPXXRXRXXXPPP 1147
+P P PP P PG PG P P PG P R PPP
Sbjct: 183 MPIPFQRPPGVPPAFPGGPPPPPG---PFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPP 239
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Frame = +2
Query: 950 AGXXXGVPPPXGXPPXRVPGX-----PGXXXSXPGXXGPLXPXP 1066
+G PPP PP +PG PG PG PL P P
Sbjct: 233 SGGSVNCPPPGVYPPAPIPGMHFPWMPGYAMRPPGSHVPLVPIP 276
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 30.3 bits (65), Expect = 3.8
Identities = 24/91 (26%), Positives = 25/91 (27%)
Frame = +2
Query: 884 PXLXXAXPPXXGPGGXXVLPXRAGXXXGVPPPXGXPPXRVPGXPGXXXSXPGXXGPLXPX 1063
P PP P P G P P +PG PG P P
Sbjct: 187 PGFYMQRPPTPPPTPRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSLPGVGP 246
Query: 1064 PXXRXXTXXXGXXPGXPXXRXRXXXPPPGLP 1156
P G PG P PPP LP
Sbjct: 247 P------RGGGAIPGLPAGFPFLLRPPPPLP 271
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 29.5 bits (63), Expect = 6.7
Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Frame = +3
Query: 741 RXMPPXLXVCAXVAXYRAKGGTXGP--PGXXXXPXARXPXGKXXTXXXPXPXWXGRXPPP 914
R P + V + +GG+ P P A P G P P PPP
Sbjct: 703 RSFAPSMSVAPPQNIFHGQGGSAAALLPSSFPVPPAVPPYGLQSMPGFPLPSLPSGPPPP 762
Query: 915 GAXGAXXFSLXGPGXAXG 968
G + GP G
Sbjct: 763 SQIGPSSSQVGGPPLVSG 780
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.1 bits (62), Expect = 8.9
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +2
Query: 923 GGXXVLPXRAGXXXGVPPPXG---XPPXRVPGXPGXXXSXPGXXGPLXPXP 1066
GG P + G PPP G PP P PG PG P P
Sbjct: 25 GGHGYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYP 75
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 8.9
Identities = 24/92 (26%), Positives = 25/92 (27%)
Frame = +2
Query: 776 GXXVPGXGGXXRAPRXAXXSXRPXPXXKXXXGXXXXPXLXXAXPPXXGPGGXXVLPXRAG 955
G P A A + P P K P A PP P G P G
Sbjct: 293 GRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKG 352
Query: 956 XXXGVPPPXGXPPXRVPGXPGXXXSXPGXXGP 1051
PPP P P PG P P
Sbjct: 353 PPP--PPPPKGPSPPPPPPPGGKKGGPPPPPP 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,310,257
Number of Sequences: 37544
Number of extensions: 366580
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4478413688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -