Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M21
         (1227 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    28   3.0  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   9.3  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 244 SQSRTAIGEHFHLFHYTFLFSCSLSSYAHERLLFFSKYYTQFWKDTELLSTF 89
           S ++  I +  H F  T +F C +SS + +      K + Q ++D  LL++F
Sbjct: 348 SCAQKGIDQFAHSFLRTPMFDCFISSESFQSFFILQKQF-QLFQDLALLTSF 398


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 750 FSIEILDDTDKGLGEICNI 806
           FS+ +L+++DKG+ E+ NI
Sbjct: 480 FSLGVLNNSDKGISELINI 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,777
Number of Sequences: 5004
Number of extensions: 70170
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)