Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M20
         (1294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.35 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 473 PXXEXPXPPPXGXXXXXGXPPXPPPG 396
           P    P PPP G       PP PPPG
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = -3

Query: 566 PPXSPXXXXXTXSPLGGXXAPXXFXGGGGXGPXXEXPXPPPXGXXXXXGXPPXPPP 399
           PP  P     T +P      P     GG        P PPP G       PP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGG------PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 471 GXPPPXPPKXXRGXGPP 521
           G PPP PP    G GPP
Sbjct: 760 GPPPPPPPPGVAGAGPP 776


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = -3

Query: 485 GGXGPXXEXPXPPPXGXXXXXGXPPXPPPGXXXPXXP 375
           G        P PPP       G  P PP G   P  P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.148    0.496 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,821
Number of Sequences: 5004
Number of extensions: 18693
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)