Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M18
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    80   7e-16
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    29   1.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   2.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   4.2  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 79.8 bits (188), Expect = 7e-16
 Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 6/247 (2%)
 Frame = +1

Query: 187 KFLXSFDHVLSDCDGVIWTQDS-LPRVGEFFKQMKKRGKTVNFVSNNSLRSRANYEAQFK 363
           +F+  FD  L DCDGV+W+    +P V +  K ++  GK + FVSNNS +SR  Y  +  
Sbjct: 13  EFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYMNKIN 72

Query: 364 AASIDNGFESLIIPSIAVAEYLKSV---TFNKTVYCVTCTETKRVLEAHGFKCKEG--PD 528
              I    E +   + + A Y+K V     +K V+ +     +  L+  G     G  P 
Sbjct: 73  EHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHIGGTDPS 132

Query: 529 LGPEYYGEYIQYLEDDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRMVPM 708
           L      E ++ +  D  +GAV+   D  +   K   A  YL+ P   F+    D   P 
Sbjct: 133 LRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPT 192

Query: 709 KXXXXXXXXXXXXXXXXXEVKREPVLLGKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQX 888
                                R+P +LGKP     E  +      D  +  F+GD +   
Sbjct: 193 N-GKFLPGSGAISYPLIFSTGRQPKILGKPYDEMMEAIIANVNF-DRKKACFVGDRLNTD 250

Query: 889 VSLGKSS 909
           +   K+S
Sbjct: 251 IQFAKNS 257


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 784 LLGKPGRVFGEFAMKRAGITDPSRVLFIGDMIAQXVSLGKSSW 912
           L+ KP     E  M+ AG+TD  + +F+ D     +   +  W
Sbjct: 145 LIAKPMPEMYERVMREAGVTDKDKCIFVDDSYGNILGAREFGW 187


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 870 TDKKNSTGIGDAGSLHSEFTENPSWLPKQHGLSFHF 763
           T+ +NS+     GS+HS   E+P+ L +QH  SF F
Sbjct: 40  TNSQNSS----VGSVHSPILESPTSLNRQHRNSFSF 71


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 891 YXLGDHVTDKKNSTGIGDAGSLHSEFTENP 802
           Y   +++T     +GI DA SL S+FT +P
Sbjct: 147 YTSSNNMTSTSRMSGIHDALSLQSDFTRSP 176


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 320 ITAFDPEQIMKLNSKQPASTTALRA*SFHLSQWQSTLNQLHS 445
           +TAF   Q  KLN+K+ +S        F L  W  +  +LH+
Sbjct: 436 LTAFHKLQNEKLNTKKESSAPLSLVTDFLLHSWPKSAERLHT 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,034,754
Number of Sequences: 5004
Number of extensions: 74213
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)