Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M18
(1275 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 99 9e-21
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 73 6e-13
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 50 4e-06
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 30 3.4
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 7.8
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 29 7.8
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 98.7 bits (235), Expect = 9e-21
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 12/257 (4%)
Frame = +1
Query: 172 VEXLHKFLXSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNSLRSRANY 348
+E + S + + DCDGVIW D L V E ++ +GK + FV+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 349 EAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEG 522
+F+ ++ E + S A A YL+S+ F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 523 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFKINLPKM-YRAITYLKRPEVLF 675
P G + G Y+++ +D I GAVV D N K+ Y + + P LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251
Query: 676 INGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGKPGRVFGEFAMKRAGITDPSR 855
I D + + K+EP+++GKP ++ K+ GIT S+
Sbjct: 252 IATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT-TSQ 310
Query: 856 VLFIGDMIAQXVSLGKS 906
+ +GD + + G++
Sbjct: 311 ICMVGDRLDTDILFGQN 327
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 72.5 bits (170), Expect = 6e-13
Identities = 45/123 (36%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Frame = +1
Query: 166 LSVEXLHKFLXSFDHVLSDCDGVIWTQDSLPR-VGEFFKQMKKRGKTVNFVSNNSLRSRA 342
L+ + + S D L DCDGVIW D L V E ++K GK + FV+NNS +SR
Sbjct: 10 LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69
Query: 343 NYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGFKCK 516
Y +F+A ++ E + S A A +LK F+ K VY V L GF+C
Sbjct: 70 QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129
Query: 517 EGP 525
GP
Sbjct: 130 GGP 132
Score = 35.1 bits (77), Expect = 0.12
Identities = 21/98 (21%), Positives = 42/98 (42%)
Frame = +1
Query: 616 INLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGK 795
+N +Y ++ + P LFI D M V++EP+++GK
Sbjct: 192 VNRLLLYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGK 251
Query: 796 PGRVFGEFAMKRAGITDPSRVLFIGDMIAQXVSLGKSS 909
P +F +K + + SR+ +GD + + G+++
Sbjct: 252 PSSFLMDFLLKSFNL-ETSRMCMVGDRLDTDILFGQNT 288
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 50.0 bits (114), Expect = 4e-06
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +1
Query: 277 KQMKKRGKTVNFVSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NK 450
+ + +GK + FV+NNS +SR Y +F+ ++ E + S A YL+S+ F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 451 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 594
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 30.3 bits (65), Expect = 3.4
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +1
Query: 397 IIPSIAVAEYLKSVTFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 570
++PS+ Y + F++T+Y + C+ ++KRV++ K E L E + + E
Sbjct: 24 VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77
Query: 571 DDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRM 699
+D+ G + D +N+ I R ++F+NG+ D +
Sbjct: 78 EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDDEI 120
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.1 bits (62), Expect = 7.8
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 274 FKQMKKRGKTVNFVSNNSLRSR-ANYEAQFKAA---SIDNGFESLIIPSIAVAEYLKSVT 441
F++M ++ NF NS + R A + K A S+D+ + P A + S+T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266
Query: 442 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 546
++ + V CT+ +RV E + KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 417 HCDRWNDQALKAVVDAGCFELSFIICSGSKAVIGNEIYCL-PAFLHL 280
HC + +D+ LKAV+ GC L ++ +G + + N + L + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,658,993
Number of Sequences: 37544
Number of extensions: 483545
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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