Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M17
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.26 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   3.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   9.7  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    26   9.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   9.7  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 292 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 462
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 603 AWPRSRLWFGWRGTFFILITG 541
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 785 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSXLMRVCG 892
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +1

Query: 949  NMEMTGFDGSATGDVNIPGGEGXPXGDAQXTTSKXT-PGKT-NVVKGSALXXXAYGRSXG 1122
            N+E   F G AT    IP GEG        T    T  GKT  V K + L      R+ G
Sbjct: 209  NIEHQDFQGRATWGATIPTGEGEVDDHGHGTHVAGTIAGKTFGVSKNAKLVAVKVMRADG 268


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 925 FRHCSCHLHRHPTYSH*XTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 770
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,104,719
Number of Sequences: 5004
Number of extensions: 79719
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)