Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M15
         (1266 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   114   5e-24
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   109   1e-22
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    86   2e-15
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   6e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   5e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    57   8e-07
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    45   0.005
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.006
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.026
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.078
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.14 
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    37   1.3  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   9.0  
UniRef50_Q9VA38 Cluster: CG12072-PA; n=5; Sophophora|Rep: CG1207...    34   9.0  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  114 bits (274), Expect = 5e-24
 Identities = 68/119 (57%), Positives = 73/119 (61%)
 Frame = +2

Query: 617 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 796
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76

Query: 797 GTVKRPXCWRFXIGSAPLTSITKIDAQVXGGETRXDYKDTRXFPLEAPSCALLFRPXRL 973
               RP   RF IGSAPLTSI K DAQ+ GGETR DYKD R FPL APSCALLF P  L
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGL 132


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
            root|Rep: Putative uncharacterized protein - Salmonella
            typhimurium
          Length = 127

 Score =  109 bits (262), Expect = 1e-22
 Identities = 54/72 (75%), Positives = 55/72 (76%)
 Frame = +2

Query: 785  SKRPGTVKRPXCWRFXIGSAPLTSITKIDAQVXGGETRXDYKDTRXFPLEAPSCALLFRP 964
            SK+  T       RF IGSAPLTSITKIDAQV GGETR DYKDTR FPLEAPSCALLFRP
Sbjct: 2    SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 965  XRLXXTCXPFSL 1000
             RL  TC PFSL
Sbjct: 62   CRLPDTCPPFSL 73


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 85.8 bits (203), Expect = 2e-15
 Identities = 41/54 (75%), Positives = 43/54 (79%)
 Frame = +2

Query: 803 VKRPXCWRFXIGSAPLTSITKIDAQVXGGETRXDYKDTRXFPLEAPSCALLFRP 964
           V+ P   RF IGSAPLTSITK DAQ+ GGETR DYKDTR FPL APSCALLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 6e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -3

Query: 793 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 680
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 5e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 593 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 760
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 57.2 bits (132), Expect = 8e-07
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
 Frame = +2

Query: 692 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPXCWRFXIGSAPLTSITK 865
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 866 IDAQVXGGETRXDYKDTRXFPLEAPSCALLFRP 964
           I  Q    +T+ +YK T  FPL++PS +LLF P
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p07168;
            n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
            protein CKO_pCKO2p07168 - Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 44.8 bits (101), Expect = 0.005
 Identities = 27/59 (45%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 1050 PEXXTYXXSYXKAXXXXR-EKGXQVXXXRQGRNRRAHEGASRGKXLVSL*SXRVSPPXT 877
            P   T   SY KA    + +K  QV   RQGRNRRAHEGA+  K   SL      PP T
Sbjct: 41   PSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.006
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 712 HSKAVIRLSTESGDNAGKNM 771
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.026
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 396 DPDMIRYIDEXGQTTTRMQ 452
           DPDMIRYIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.078
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 591 SALMNRPTRGERRFAYW 641
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.14
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 663 ERGSGRAPNTQTASPRALADSLMQ 592
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p06146;
            n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
            protein CKO_pCKO3p06146 - Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 888  GKPDXTIKIPGVSPWKLPRAPSCSDPXXYXIPV-XLSPXGKXGLXHSSXXRFXXRXRXFA 1064
            G+    +KI  VS   LP A SCS+P    IPV   S  G   L HSS      R R FA
Sbjct: 26   GETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFA 85


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 9.0
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 802 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 680
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_Q9VA38 Cluster: CG12072-PA; n=5; Sophophora|Rep:
           CG12072-PA - Drosophila melanogaster (Fruit fly)
          Length = 1105

 Score = 33.9 bits (74), Expect = 9.0
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +1

Query: 847 PDEHHKNRRSSXRWGNPTGL*RYQXFPPGSSLVRPPVPTLXXTXYLSAFLP 999
           P  HH ++ SS   GNP G   +   P G S V PP P        SA  P
Sbjct: 161 PHSHHTHQPSSRTVGNPGGNGGFSPSPSGFSEVAPPAPPPRNPTACSAATP 211


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,431,297
Number of Sequences: 1657284
Number of extensions: 15327895
Number of successful extensions: 32200
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32196
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 128769889362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)