Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M14
(1344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 35 0.17
12_02_0299 - 17051570-17052474,17053542-17053755 31 2.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.6
04_03_0904 + 20717005-20718087 30 3.6
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 6.3
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 34.7 bits (76), Expect = 0.17
Identities = 26/100 (26%), Positives = 26/100 (26%)
Frame = -2
Query: 722 PXPXXXPXPXXXXXXXXXXXPXPXXXPXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQ 543
P P P P P P P PPP P P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPP 603
Query: 542 XPFPPPXXVXLXLXXXXXXPPXPPEPXTXTXXHX*XPXPP 423
P PPP L PP PP P H P PP
Sbjct: 604 PPPPPPP----ILPNRSVPPPPPPPPPLPN--HSVLPPPP 637
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/100 (25%), Positives = 27/100 (27%)
Frame = -2
Query: 722 PXPXXXPXPXXXXXXXXXXXPXPXXXPXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQ 543
P P P P P P P P P P P P
Sbjct: 565 PPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPIL--------PNRS 616
Query: 542 XPFPPPXXVXLXLXXXXXXPPXPPEPXTXTXXHX*XPXPP 423
P PPP L PP PP P + + P PP
Sbjct: 617 VPPPPPPPP--PLPNHSVLPPPPPPPPPPSLPNRLVPPPP 654
Score = 29.1 bits (62), Expect = 8.4
Identities = 21/85 (24%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Frame = -2
Query: 644 PXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQXPFP----PPXXVXLXLXXXXXXPPX 477
P PPP P P P ++ P PP L PP
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPA 749
Query: 476 PPEPXTXTXXHX*XPXPPXKRFRXP 402
PP P T P PP + P
Sbjct: 750 PPPPPLMTGKKAPAPPPPPPQAPKP 774
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.7 bits (66), Expect = 2.7
Identities = 27/106 (25%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Frame = -2
Query: 722 PXPXXXPXPXXXXXXXXXXXPXPXXXPXP-PPXXXXPXXXXXXXXXPXXXXXXXXXXPK- 549
P P P P P P P P PP P P P
Sbjct: 235 PPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPP 294
Query: 548 --HQXPFP--PPXXVXLXLXXXXXXPPXPPEPXTXTXXHX*XPXPP 423
PFP PP L PP PP P P PP
Sbjct: 295 PAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPP 340
Score = 29.5 bits (63), Expect = 6.3
Identities = 23/100 (23%), Positives = 24/100 (24%)
Frame = -2
Query: 722 PXPXXXPXPXXXXXXXXXXXPXPXXXPXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQ 543
P P P P P P P PP P P P
Sbjct: 228 PIPFLTPPPPPFLPFPLP--PIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFS 285
Query: 542 XPFPPPXXVXLXLXXXXXXPPXPPEPXTXTXXHX*XPXPP 423
P PPP PP P P + P PP
Sbjct: 286 PPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPP 325
Score = 29.5 bits (63), Expect = 6.3
Identities = 20/84 (23%), Positives = 21/84 (25%)
Frame = -2
Query: 662 PXPXXXPXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQXPFPPPXXVXLXLXXXXXXP 483
P P P PPP P P P P+ PP P
Sbjct: 228 PIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPF-PLPPWPWAPPPAFPFPHLPPIFSP 286
Query: 482 PXPPEPXTXTXXHX*XPXPPXKRF 411
P PP P PP F
Sbjct: 287 PSPPPPPPPAFPFPFPQLPPLPHF 310
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.6
Identities = 18/74 (24%), Positives = 19/74 (25%)
Frame = -2
Query: 644 PXPPPXXXXPXXXXXXXXXPXXXXXXXXXXPKHQXPFPPPXXVXLXLXXXXXXPPXPPEP 465
P PPP P P P PPP + PP PP P
Sbjct: 55 PPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPP 114
Query: 464 XTXTXXHX*XPXPP 423
P PP
Sbjct: 115 SPPPSAPPPPPPPP 128
>04_03_0904 + 20717005-20718087
Length = 360
Score = 30.3 bits (65), Expect = 3.6
Identities = 21/77 (27%), Positives = 27/77 (35%)
Frame = -1
Query: 555 PQTPKXLPPSXXXXPXSXXXXXXPTPSPXTXNXNXXPXXTSXSXP*TVQXTQKXLPFSXX 376
P PK PP+ P PTP+P T P + P T + K P
Sbjct: 116 PTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKP-----TPPPTYKPQPKPTPTPYT 170
Query: 375 PXXXFFSFXFXXXPSPT 325
P S+ P+PT
Sbjct: 171 PTPTPPSYKPQPKPTPT 187
Score = 29.1 bits (62), Expect = 8.4
Identities = 16/63 (25%), Positives = 18/63 (28%)
Frame = -1
Query: 633 PXPXXTXXXPXXPXXPXXXXXXXXKXPQTPKXLPPSXXXXPXSXXXXXXPTPSPXTXNXN 454
P P T P P TP PPS P PTP+P +
Sbjct: 162 PKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQ 221
Query: 453 XXP 445
P
Sbjct: 222 PKP 224
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.5 bits (63), Expect = 6.3
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -2
Query: 548 HQXPFPPPXXVXLXLXXXXXXPPXPPEPXTXTXXHX*XPXPP 423
H PPP + PP PP P H P PP
Sbjct: 52 HSPDSPPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,912,604
Number of Sequences: 37544
Number of extensions: 154451
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4225193676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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