Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_M13
(1277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 41 4e-04
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 38 0.004
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 36 0.009
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.064
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 29 1.8
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 28 2.4
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/45 (48%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 362 GXGG-GGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXG 493
G GG GGG G G GG G GG GGG GPGG G G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 39.9 bits (89), Expect = 7e-04
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 362 GXGG-GGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGG 481
G GG GG G GG GG G +GG GGG GPGG G
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/57 (43%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +2
Query: 362 GXGGGGGXKGXGGXGG--GGGXXVGGXGGGFPXXXXGPGG--GGRXXGXXXIKGGXG 520
G GG GG G GG G GG GG GGF G GG GG G GG G
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Score = 36.3 bits (80), Expect = 0.009
Identities = 25/55 (45%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 362 GXGGGGGXK-GXGGXGGGGGXXVGGXGGGFPXXXXGPGG-GGRXXGXXXIKGGXG 520
G GG G G GG GGG G GG GG GPGG GG G GG G
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGG----FGGGPGGFGGGLGGFGGGPGGFG 262
Score = 34.7 bits (76), Expect = 0.028
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +2
Query: 374 GGGXKGXGGXGGGGGXXVGGXG--GGFPXXXXGPGG-GGRXXGXXXIKGGXG 520
GGG G GG GG GG G GGF GG GG G +GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
Score = 31.5 bits (68), Expect = 0.26
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 398 GXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXGXXXIKGGXG 520
G GGG GG GG P G GG G G GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG 224
Score = 31.1 bits (67), Expect = 0.34
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 363 GXGGGGGGRXXGE--XGGEGG-XG*GARXGASRXXGGXPGG 476
G GGG GG G GG GG G G G GG PGG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
Score = 30.3 bits (65), Expect = 0.60
Identities = 26/64 (40%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Frame = +2
Query: 362 GXGGGGGXKGXG--GXGG-GGGXXVGGXG---GGFPXXXXGPGG-----GGRXXGXXXIK 508
G GG GG G G GG GG GG G GG GPGG GG G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 509 GGXG 520
GG G
Sbjct: 249 GGLG 252
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +2
Query: 362 GXGGGGGXKGXGGXGGGGGXXVGGXGG 442
G GGG G G G G GGG GG GG
Sbjct: 246 GFGGGLGGFGGGPGGFGGGP--GGHGG 270
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 37.5 bits (83), Expect = 0.004
Identities = 25/60 (41%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +2
Query: 353 RXXGXGGGGGXKGX-GGXGGGGGXXVGGXGGGFPXXXXGPGG-----GGRXXGXXXIKGG 514
R GG GG G GG GGG G GG GG G GG GG G KGG
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 35.1 bits (77), Expect = 0.021
Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +2
Query: 368 GGGGGXKGXGGXGGG----GGXXVGGXGGGFPXXXXGPGG-GGRXXGXXXIKGGXG 520
G GG G GG GG GG G GGG G GG GG G GG G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = +2
Query: 368 GGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXGXXXIKGGXG 520
GG GG +G G GG GG GG G GGR G +GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG-GRGGARGGRG 58
Score = 33.9 bits (74), Expect = 0.048
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 357 KXGXGGGGGGRXXGEXGGEGGXG*GARXGA-SRXXGGXPGGGXXQXGXXX*RGXXGXXEK 533
+ G GG GGR G GG GG G G R GA GG GG + G RG
Sbjct: 8 RGGRGGSRGGRG-GFNGGRGGFG-GGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 534 RGKTG 548
K G
Sbjct: 66 GAKGG 70
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 357 KXGXGGGGGGRXXGEXGGEGGXG*GARXGA 446
+ G GG GG R G GG G GA+ GA
Sbjct: 44 RGGRGGRGGAR--GGRGGSSGGRGGAKGGA 71
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 357 KXGXGGGGGGRXXGEXGGEGGXG*GAR 437
+ G GG GGR G GG GG GA+
Sbjct: 47 RGGRGGARGGRG-GSSGGRGGAKGGAK 72
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/51 (43%), Positives = 24/51 (47%)
Frame = +2
Query: 362 GXGGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXGXXXIKGG 514
G GG G +G G GG GG GG GGG G GGG R +GG
Sbjct: 139 GRGGFRGGRG-GSRGGFGGNSRGGFGGG---SRGGFGGGSRGGSRGGFRGG 185
Score = 33.1 bits (72), Expect = 0.085
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +2
Query: 362 GXGGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXG 493
G GG G G GG GG GG GGG G GG G
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 31.1 bits (67), Expect = 0.34
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +2
Query: 368 GGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXG 493
G G G GG GG G GG GGF G GGG G
Sbjct: 129 GARNGPAGRGGRGGFRGGR-GGSRGGFGGNSRGGFGGGSRGG 169
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 362 GXGGGG-GXKGXGGXGGGGGXXVGGXGGGF 448
G GGG G G G GG G GG GGF
Sbjct: 161 GFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 368 GGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGR 484
G GG +G G G GG G GG G GG R
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.5 bits (73), Expect = 0.064
Identities = 21/44 (47%), Positives = 21/44 (47%)
Frame = +2
Query: 362 GXGGGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXG 493
G G GG G GG GG GG GG GGG G G GG G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGR--GGFGGG-----RGRGRGGARSG 482
Score = 29.9 bits (64), Expect = 0.79
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = +2
Query: 371 GGGGXKGXGGXGGGGGXXVGGXGGGFPXXXXGPGGGGRXXGXXXIKGG 514
GGG G GG GG GG G GGF GGGR G + G
Sbjct: 446 GGGSRGGRGGFGGRGGF---GGRGGF--------GGGRGRGRGGARSG 482
Score = 29.5 bits (63), Expect = 1.0
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +3
Query: 363 GXGGGGGGRXXGEXGGEGGXG*GARXGASRXXGGXPGGG 479
G GG GGR G GG GG G G G G P G
Sbjct: 451 GGRGGFGGR--GGFGGRGGFGGGRGRGRGGARSGNPNRG 487
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 368 GGGGGXKGXGGXGGGGGXXVGGXGG 442
GGG G G GG GG G +GG GG
Sbjct: 225 GGGLGGAGLGGLGGAG---LGGFGG 246
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 363 GXGGGGGGRXXGEXGGEGGXG 425
G GG GGR G GG GG G
Sbjct: 121 GPHGGFGGRGGGRMGGRGGRG 141
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 374 GGGXKGXGGXGGGGGXXVGGXGGGFP 451
GGG G G GG G GGGFP
Sbjct: 443 GGGFPGGGFPGGSYNSQGFGMGGGFP 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.142 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,616
Number of Sequences: 5004
Number of extensions: 8632
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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