Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M13
         (1277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 389 GXGGXGGGGGXXVGGXGGGFPXXXXGPGGGG 481
           G  G    GG   G  GG         GGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50



 Score = 22.2 bits (45), Expect = 10.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 368 GGGGGXKGXGGXGGGGGXXVGGXGG 442
           G  GG    G   GGGG  +G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57



 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 362 GXGGGGGXKGXGGXGGGGGXXV 427
           G  GG    G    GGGGG  +
Sbjct: 33  GASGGSIVVGANNGGGGGGLGI 54


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 385  PPPPPPXP 362
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.142    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,221
Number of Sequences: 438
Number of extensions: 2011
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)