Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_M11
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    29   1.0  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   5.4  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   7.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   7.2  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   7.2  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   9.5  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 706 LQYGVYNIRFYGFWRRYTFQHICYRHPYTLHFLLYTK 596
           L Y V+++    F R+++ + I   HP+ LH  + TK
Sbjct: 26  LSYFVFDVLMLPFTRQFSLEDITISHPFALHEQVPTK 62


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +2

Query: 656 ISSPKAIESNVVHPVLKYRGIFDA-IADYEDKPTLIEWKKSDKPRKSIALTYDNPVQLAA 832
           I+S +  E   V+P +K   I +  + DYED+    E   + K ++   L  D+   L +
Sbjct: 629 INSQQVGEKVFVNPDVKTMDIQETFLQDYEDETFANEGLSASKFKEEFLLISDSKSDLNS 688

Query: 833 YFGAVCNDLNYKH---MKV-RDALLVIAYTDGSKADVF 934
              A  N L +K+   +KV R  L ++   D S+  +F
Sbjct: 689 EEIATPNSLEFKNNPRIKVPRSLLTILNLHDRSQLKLF 726


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 549 LVPTAI*AW*NLLNSSTPISAILSCFHFSKANLDSSVIVLFNISVTDGYCSA-*SFLWCF 373
           L+PT +    NLLN+S   S++L    F K   D  ++ L++      YC    S+ W F
Sbjct: 5   LIPTFVPYGKNLLNTSFSFSSLLCILCFYK---DGPLLFLYSPLSASYYCLLYASYTWNF 61

Query: 372 I 370
           +
Sbjct: 62  V 62


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 562 SVVKLGTDCHLSLVKSIKFFNSHFGNPLLFPLLQSQPRLFSHCF 431
           +V++LG D  L +++ I    +H+   +  P+L S   LF  CF
Sbjct: 103 AVIQLGQDSQLRVLQIIPIICTHYAASMKLPILIS---LFRICF 143


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 785 RKSIALTYDNPVQLAAYFGAVCNDLNYKHMKVRDAL 892
           RK++ + YD    LA Y G+  ND  Y  + +   L
Sbjct: 556 RKNVLILYDAVQTLADYVGSALNDKRYIELLITPLL 591


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
 Frame = +2

Query: 455 LALEKW--KQERIAEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPRSQLR--IEKEVEG 622
           + ++ W  +Q ++ E+G     + + +   + +   +  + Y T     LR  I  EV+G
Sbjct: 57  ITMDNWSERQVKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEVDG 116

Query: 623 V-WVSVADVLKSISSPKAIESNVVHPVL 703
           V WV V D  KS+SS  ++ S+   P +
Sbjct: 117 VEWVKV-DRPKSVSSHASVTSSSTVPTI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,177,524
Number of Sequences: 5004
Number of extensions: 87046
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)